RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 RGPD1P0DJD0 1748 aa24.86■■□□□ 1.57
CHCHD3-202ENST00000423635 R3HDM1Q15032 1099 aaKnown RBP24.86■■□□□ 1.57
CHCHD3-202ENST00000423635 PRR36Q9H6K5 1346 aa24.84■■□□□ 1.57
CHCHD3-202ENST00000423635 EIF3AQ14152 1382 aaKnown RBP24.83■■□□□ 1.57
CHCHD3-202ENST00000423635 HIRIP3Q9BW71 556 aaPredicted RBP24.83■■□□□ 1.56
CHCHD3-202ENST00000423635 WASLO00401 505 aaPredicted RBP24.82■■□□□ 1.56
CHCHD3-202ENST00000423635 EZH2Q15910 746 aaKnown RBP24.82■■□□□ 1.56
CHCHD3-202ENST00000423635 CAMKK2Q96RR4 588 aa24.82■■□□□ 1.56
CHCHD3-202ENST00000423635 TRAK1Q9UPV9 953 aa24.82■■□□□ 1.56
CHCHD3-202ENST00000423635 THSD7AQ9UPZ6 1657 aa24.82■■□□□ 1.56
CHCHD3-202ENST00000423635 ADGRB1O14514 1584 aa24.81■■□□□ 1.56
CHCHD3-202ENST00000423635 PRDM11Q9NQV5 511 aa24.8■■□□□ 1.56
CHCHD3-202ENST00000423635 SPATA31A1Q5TZJ5 1347 aa24.8■■□□□ 1.56
CHCHD3-202ENST00000423635 FAM196AQ6ZSG2 479 aa24.79■■□□□ 1.56
CHCHD3-202ENST00000423635 NGDNQ8NEJ9 315 aaKnown RBP24.79■■□□□ 1.56
CHCHD3-202ENST00000423635 MINK1Q8N4C8 1332 aaPredicted RBP24.79■■□□□ 1.56
CHCHD3-202ENST00000423635 TULP4Q9NRJ4 1543 aa24.79■■□□□ 1.56
CHCHD3-202ENST00000423635 TNS1Q9HBL0 1735 aaKnown RBP24.77■■□□□ 1.56
CHCHD3-202ENST00000423635 CRYBG1Q9Y4K1 1723 aa24.77■■□□□ 1.56
CHCHD3-202ENST00000423635 PAK3O75914 559 aaPredicted RBP24.77■■□□□ 1.56
CHCHD3-202ENST00000423635 TRIM37O94972 964 aa24.76■■□□□ 1.55
CHCHD3-202ENST00000423635 PARD3Q8TEW0 1356 aa24.74■■□□□ 1.55
CHCHD3-202ENST00000423635 KIAA0232Q92628 1395 aa24.73■■□□□ 1.55
CHCHD3-202ENST00000423635 APBA3O96018 575 aa24.72■■□□□ 1.55
CHCHD3-202ENST00000423635 CHRNA2Q15822 529 aa24.71■■□□□ 1.55
CHCHD3-202ENST00000423635 BARGINQ6ZT62 677 aa24.71■■□□□ 1.55
CHCHD3-202ENST00000423635 STAC3Q96MF2 364 aa24.7■■□□□ 1.54
CHCHD3-202ENST00000423635 STRN4Q9NRL3 753 aa24.7■■□□□ 1.54
CHCHD3-202ENST00000423635 NUDT16Q96DE0 195 aaKnown RBP24.69■■□□□ 1.54
CHCHD3-202ENST00000423635 ZC3H6P61129 1189 aaKnown RBP24.67■■□□□ 1.54
CHCHD3-202ENST00000423635 KDM2AQ9Y2K7 1162 aa24.67■■□□□ 1.54
CHCHD3-202ENST00000423635 DCAF11Q8TEB1 546 aa24.66■■□□□ 1.54
CHCHD3-202ENST00000423635 ATP7BP35670 1465 aa24.65■■□□□ 1.54
CHCHD3-202ENST00000423635 PDE3BQ13370 1112 aa24.65■■□□□ 1.54
CHCHD3-202ENST00000423635 EVA1CP58658 441 aa24.64■■□□□ 1.54
CHCHD3-202ENST00000423635 NBPF8Q3BBV2 869 aa24.64■■□□□ 1.54
CHCHD3-202ENST00000423635 NBPF14Q5TI25 921 aa24.64■■□□□ 1.54
CHCHD3-202ENST00000423635 USP35Q9P2H5 1018 aa24.64■■□□□ 1.54
CHCHD3-202ENST00000423635 SSH2Q76I76 1423 aa24.62■■□□□ 1.53
CHCHD3-202ENST00000423635 PHRF1Q9P1Y6 1649 aaKnown RBP24.62■■□□□ 1.53
CHCHD3-202ENST00000423635 POLR3AO14802 1390 aaPredicted RBP24.62■■□□□ 1.53
CHCHD3-202ENST00000423635 NUTM2GQ5VZR2 741 aa24.61■■□□□ 1.53
CHCHD3-202ENST00000423635 TCP11L2Q8N4U5 519 aa24.61■■□□□ 1.53
CHCHD3-202ENST00000423635 CDK19Q9BWU1 502 aa24.61■■□□□ 1.53
CHCHD3-202ENST00000423635 THRAP3Q9Y2W1 955 aaKnown RBP24.61■■□□□ 1.53
CHCHD3-202ENST00000423635 RREB1Q92766 1687 aa24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 ITSN1Q15811 1721 aa24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 PLEKHG3A1L390 1219 aa24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 YY1P25490 414 aa24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 LARP1Q6PKG0 1096 aaKnown RBP24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 CCDC61Q9Y6R9 512 aa24.6■■□□□ 1.53
CHCHD3-202ENST00000423635 ACEP12821 1306 aa24.59■■□□□ 1.53
CHCHD3-202ENST00000423635 CPDO75976 1380 aa24.58■■□□□ 1.53
CHCHD3-202ENST00000423635 CAMTA1Q9Y6Y1 1673 aa24.58■■□□□ 1.53
CHCHD3-202ENST00000423635 C11orf95C9JLR9 678 aaPredicted RBP24.57■■□□□ 1.52
CHCHD3-202ENST00000423635 RAB3GAP2Q9H2M9 1393 aa24.56■■□□□ 1.52
CHCHD3-202ENST00000423635 NUP188Q5SRE5 1749 aa24.56■■□□□ 1.52
CHCHD3-202ENST00000423635 ABTB2Q8N961 1025 aa24.56■■□□□ 1.52
CHCHD3-202ENST00000423635 SPON1Q9HCB6 807 aa24.56■■□□□ 1.52
CHCHD3-202ENST00000423635 ARHGEF28Q8N1W1 1705 aaKnown RBP24.55■■□□□ 1.52
CHCHD3-202ENST00000423635 USP19O94966 1318 aa24.55■■□□□ 1.52
CHCHD3-202ENST00000423635 KCNQ2O43526 872 aa24.54■■□□□ 1.52
CHCHD3-202ENST00000423635 LMO7Q8WWI1 1683 aa24.53■■□□□ 1.52
CHCHD3-202ENST00000423635 NRKQ7Z2Y5 1582 aa24.52■■□□□ 1.52
CHCHD3-202ENST00000423635 GCP02774 474 aa24.51■■□□□ 1.51
CHCHD3-202ENST00000423635 NLRP13Q86W25 1043 aa24.51■■□□□ 1.51
CHCHD3-202ENST00000423635 TOPAZ1Q8N9V7 1692 aa24.5■■□□□ 1.51
CHCHD3-202ENST00000423635 PPP1R1BQ9UD71 204 aaPredicted RBP24.5■■□□□ 1.51
CHCHD3-202ENST00000423635 PLSCR1O15162 318 aa24.49■■□□□ 1.51
CHCHD3-202ENST00000423635 NINLQ9Y2I6 1382 aa24.48■■□□□ 1.51
CHCHD3-202ENST00000423635 PARP4Q9UKK3 1724 aaKnown RBP24.47■■□□□ 1.51
CHCHD3-202ENST00000423635 DCAF8L1A6NGE4 600 aa24.47■■□□□ 1.51
CHCHD3-202ENST00000423635 COL5A2P05997 1499 aaPredicted RBP24.46■■□□□ 1.51
CHCHD3-202ENST00000423635 CRB1P82279 1406 aa24.45■■□□□ 1.5
CHCHD3-202ENST00000423635 BRD4O60885 1362 aaPredicted RBP24.44■■□□□ 1.5
CHCHD3-202ENST00000423635 OVOS2A0A0G2JMS6 1433 aa24.43■■□□□ 1.5
CHCHD3-202ENST00000423635 OVOS2A0A0J9YW53 1432 aa24.43■■□□□ 1.5
CHCHD3-202ENST00000423635 OVOS2Q6IE36 1432 aa24.43■■□□□ 1.5
CHCHD3-202ENST00000423635 PEAK1Q9H792 1746 aa24.42■■□□□ 1.5
CHCHD3-202ENST00000423635 BCL11BQ9C0K0 894 aaPredicted RBP24.41■■□□□ 1.5
CHCHD3-202ENST00000423635 AATKQ6ZMQ8 1374 aa24.4■■□□□ 1.5
CHCHD3-202ENST00000423635 DDB1Q16531 1140 aa24.4■■□□□ 1.5
CHCHD3-202ENST00000423635 RGPD3A6NKT7 1758 aaPredicted RBP24.4■■□□□ 1.5
CHCHD3-202ENST00000423635 RGPD4Q7Z3J3 1758 aa24.4■■□□□ 1.5
CHCHD3-202ENST00000423635 PPIP5K1Q6PFW1 1433 aa24.39■■□□□ 1.5
CHCHD3-202ENST00000423635 SRPK2P78362 688 aaKnown RBP24.38■■□□□ 1.49
CHCHD3-202ENST00000423635 ANO8Q9HCE9 1232 aaPredicted RBP24.38■■□□□ 1.49
CHCHD3-202ENST00000423635 PROM2Q8N271 834 aa24.37■■□□□ 1.49
CHCHD3-202ENST00000423635 KIAA1210Q9ULL0 1709 aa24.37■■□□□ 1.49
CHCHD3-202ENST00000423635 BCL9O00512 1426 aa24.37■■□□□ 1.49
CHCHD3-202ENST00000423635 NLRP6P59044 892 aa24.36■■□□□ 1.49
CHCHD3-202ENST00000423635 NBPF1Q3BBV0 1214 aa24.36■■□□□ 1.49
CHCHD3-202ENST00000423635 PTF1AQ7RTS3 328 aa24.36■■□□□ 1.49
CHCHD3-202ENST00000423635 SBF2Q86WG5 1849 aa24.36■■□□□ 1.49
CHCHD3-202ENST00000423635 CABP2Q9NPB3 220 aa24.35■■□□□ 1.49
CHCHD3-202ENST00000423635 TOM1L2Q6ZVM7 507 aa24.35■■□□□ 1.49
CHCHD3-202ENST00000423635 CDCA7Q9BWT1 371 aaPredicted RBP24.35■■□□□ 1.49
CHCHD3-202ENST00000423635 MARCH10Q8NA82 808 aaPredicted RBP24.34■■□□□ 1.49
CHCHD3-202ENST00000423635 PDGFDQ9GZP0 370 aaPredicted RBP24.34■■□□□ 1.49
CHCHD3-202ENST00000423635 CABP1Q9NZU7 370 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms