RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 SMG6Q86US8 1419 aaKnown RBP27.94■■■□□ 2.06
GPC1-202ENST00000420138 NRKQ7Z2Y5 1582 aa27.93■■■□□ 2.06
GPC1-202ENST00000420138 C14orf37Q86TY3 774 aa27.93■■■□□ 2.06
GPC1-202ENST00000420138 USP6P35125 1406 aa27.93■■■□□ 2.06
GPC1-202ENST00000420138 SSH2Q76I76 1423 aa27.93■■■□□ 2.06
GPC1-202ENST00000420138 ZRANB1Q9UGI0 708 aa27.92■■■□□ 2.06
GPC1-202ENST00000420138 SALL2Q9Y467 1007 aaPredicted RBP27.9■■■□□ 2.06
GPC1-202ENST00000420138 COL3A1P02461 1466 aaPredicted RBP27.9■■■□□ 2.06
GPC1-202ENST00000420138 TTC21BQ7Z4L5 1316 aa27.9■■■□□ 2.06
GPC1-202ENST00000420138 CFAP53Q96M91 514 aa27.9■■■□□ 2.06
GPC1-202ENST00000420138 PMFBP1Q8TBY8 1022 aa27.89■■■□□ 2.06
GPC1-202ENST00000420138 PNPLA6Q8IY17 1366 aa27.88■■■□□ 2.05
GPC1-202ENST00000420138 NUDCQ9Y266 331 aa27.88■■■□□ 2.05
GPC1-202ENST00000420138 FBLN1P23142 703 aa27.87■■■□□ 2.05
GPC1-202ENST00000420138 DMRT2Q9Y5R5 561 aa27.87■■■□□ 2.05
GPC1-202ENST00000420138 CCDC146Q8IYE0 955 aa27.86■■■□□ 2.05
GPC1-202ENST00000420138 POLKQ9UBT6 870 aa27.85■■■□□ 2.05
GPC1-202ENST00000420138 TMEM94Q12767 1356 aa27.85■■■□□ 2.05
GPC1-202ENST00000420138 XIRP1Q702N8 1843 aaKnown RBP27.85■■■□□ 2.05
GPC1-202ENST00000420138 AATKQ6ZMQ8 1374 aa27.84■■■□□ 2.05
GPC1-202ENST00000420138 PDE3BQ13370 1112 aa27.83■■■□□ 2.05
GPC1-202ENST00000420138 COG3Q96JB2 828 aa27.83■■■□□ 2.05
GPC1-202ENST00000420138 OVOS2A0A0J9YW53 1432 aa27.82■■■□□ 2.04
GPC1-202ENST00000420138 OVOS2Q6IE36 1432 aa27.82■■■□□ 2.04
GPC1-202ENST00000420138 ZNF521Q96K83 1311 aa27.82■■■□□ 2.04
GPC1-202ENST00000420138 ZNF335Q9H4Z2 1342 aaPredicted RBP27.82■■■□□ 2.04
GPC1-202ENST00000420138 NCOA3Q9Y6Q9 1424 aa27.82■■■□□ 2.04
GPC1-202ENST00000420138 NGDNQ8NEJ9 315 aaKnown RBP27.81■■■□□ 2.04
GPC1-202ENST00000420138 APAF1O14727 1248 aa27.8■■■□□ 2.04
GPC1-202ENST00000420138 C19orf44Q9H6X5 657 aa27.8■■■□□ 2.04
GPC1-202ENST00000420138 TTC21AQ8NDW8 1320 aa27.78■■■□□ 2.04
GPC1-202ENST00000420138 CDCA7LQ96GN5 454 aa27.78■■■□□ 2.04
GPC1-202ENST00000420138 EMILIN1Q9Y6C2 1016 aa27.76■■■□□ 2.04
GPC1-202ENST00000420138 LRRC7Q96NW7 1537 aa27.76■■■□□ 2.03
GPC1-202ENST00000420138 NEFLP07196 543 aa27.76■■■□□ 2.03
GPC1-202ENST00000420138 USP31Q70CQ4 1352 aa27.75■■■□□ 2.03
GPC1-202ENST00000420138 IQSEC2Q5JU85 1478 aa27.74■■■□□ 2.03
GPC1-202ENST00000420138 FKBP8Q14318 412 aa27.74■■■□□ 2.03
GPC1-202ENST00000420138 RUNDC1Q96C34 613 aa27.74■■■□□ 2.03
GPC1-202ENST00000420138 PHF8Q9UPP1 1060 aa27.74■■■□□ 2.03
GPC1-202ENST00000420138 DCCP43146 1447 aa27.74■■■□□ 2.03
GPC1-202ENST00000420138 U2AF1L5P0DN76 240 aaPredicted RBP27.74■■■□□ 2.03
GPC1-202ENST00000420138 U2AF1Q01081 240 aaKnown RBP eCLIP27.74■■■□□ 2.03
GPC1-202ENST00000420138 DIAPH1O60610 1272 aaKnown RBP27.73■■■□□ 2.03
GPC1-202ENST00000420138 CDK12Q9NYV4 1490 aaPredicted RBP27.73■■■□□ 2.03
GPC1-202ENST00000420138 ATF3P18847 181 aa27.72■■■□□ 2.03
GPC1-202ENST00000420138 MSH6P52701 1360 aa27.71■■■□□ 2.03
GPC1-202ENST00000420138 RRS1Q15050 365 aaKnown RBP27.71■■■□□ 2.03
GPC1-202ENST00000420138 NGEFQ8N5V2 710 aa27.71■■■□□ 2.03
GPC1-202ENST00000420138 MAP2P11137 1827 aaKnown RBP27.7■■■□□ 2.03
GPC1-202ENST00000420138 ESCO1Q5FWF5 840 aa27.7■■■□□ 2.02
GPC1-202ENST00000420138 PPM1GO15355 546 aaPredicted RBP27.69■■■□□ 2.02
GPC1-202ENST00000420138 PIK3C2AO00443 1686 aa27.69■■■□□ 2.02
GPC1-202ENST00000420138 U2SURPO15042 1029 aaKnown RBP27.69■■■□□ 2.02
GPC1-202ENST00000420138 PLEKHF1Q96S99 279 aa27.69■■■□□ 2.02
GPC1-202ENST00000420138 TCP11L2Q8N4U5 519 aa27.68■■■□□ 2.02
GPC1-202ENST00000420138 RNF123Q5XPI4 1314 aa27.68■■■□□ 2.02
GPC1-202ENST00000420138 KIF1AQ12756 1690 aa27.67■■■□□ 2.02
GPC1-202ENST00000420138 C1orf167Q5SNV9 1468 aa27.66■■■□□ 2.02
GPC1-202ENST00000420138 MST1RQ04912 1400 aa27.66■■■□□ 2.02
GPC1-202ENST00000420138 IL13P35225 146 aa27.66■■■□□ 2.02
GPC1-202ENST00000420138 CADPS2Q86UW7 1296 aa27.66■■■□□ 2.02
GPC1-202ENST00000420138 PHF23Q9BUL5 403 aaPredicted RBP27.66■■■□□ 2.02
GPC1-202ENST00000420138 ORAI2Q96SN7 254 aa27.65■■■□□ 2.02
GPC1-202ENST00000420138 GOLGA2Q08379 1002 aa27.64■■■□□ 2.02
GPC1-202ENST00000420138 NCBP3Q53F19 620 aaKnown RBP27.62■■■□□ 2.01
GPC1-202ENST00000420138 DUSP27Q5VZP5 1158 aa27.62■■■□□ 2.01
GPC1-202ENST00000420138 WWC1Q8IX03 1113 aa27.62■■■□□ 2.01
GPC1-202ENST00000420138 TRMT2AQ8IZ69 625 aaKnown RBP27.62■■■□□ 2.01
GPC1-202ENST00000420138 SPINK5Q9NQ38 1064 aaPredicted RBP27.62■■■□□ 2.01
GPC1-202ENST00000420138 SLFN5Q08AF3 891 aa27.62■■■□□ 2.01
GPC1-202ENST00000420138 PELP1Q8IZL8 1130 aaKnown RBP27.62■■■□□ 2.01
GPC1-202ENST00000420138 RRP7AQ9Y3A4 280 aaKnown RBP27.62■■■□□ 2.01
GPC1-202ENST00000420138 USP54Q70EL1 1684 aa27.61■■■□□ 2.01
GPC1-202ENST00000420138 AEBP2Q6ZN18 517 aaPredicted RBP27.61■■■□□ 2.01
GPC1-202ENST00000420138 MARF1Q9Y4F3 1742 aaKnown RBP27.6■■■□□ 2.01
GPC1-202ENST00000420138 NLRP6P59044 892 aa27.6■■■□□ 2.01
GPC1-202ENST00000420138 PEAK1Q9H792 1746 aa27.59■■■□□ 2.01
GPC1-202ENST00000420138 IRX6P78412 446 aaPredicted RBP27.59■■■□□ 2.01
GPC1-202ENST00000420138 CCDC27Q2M243 656 aa27.59■■■□□ 2.01
GPC1-202ENST00000420138 FCHSD2O94868 740 aa27.58■■■□□ 2.01
GPC1-202ENST00000420138 RSPH6AQ9H0K4 717 aa27.58■■■□□ 2.01
GPC1-202ENST00000420138 MAP3K19Q56UN5 1328 aa27.58■■■□□ 2.01
GPC1-202ENST00000420138 ABTB2Q8N961 1025 aa27.57■■■□□ 2
GPC1-202ENST00000420138 PSME1Q06323 249 aa27.57■■■□□ 2
GPC1-202ENST00000420138 RCAN3Q9UKA8 241 aa27.57■■■□□ 2
GPC1-202ENST00000420138 PAK3O75914 559 aaPredicted RBP27.56■■■□□ 2
GPC1-202ENST00000420138 NEUROD2Q15784 382 aa27.56■■■□□ 2
GPC1-202ENST00000420138 FOXO3O43524 673 aa27.55■■■□□ 2
GPC1-202ENST00000420138 NUTM2GQ5VZR2 741 aa27.55■■■□□ 2
GPC1-202ENST00000420138 LTBP4Q8N2S1 1624 aa27.55■■■□□ 2
GPC1-202ENST00000420138 SOX12O15370 315 aa27.55■■■□□ 2
GPC1-202ENST00000420138 EIF4A2Q14240 407 aaKnown RBP27.53■■■□□ 2
GPC1-202ENST00000420138 HSP90AB2PQ58FF8 381 aa27.53■■■□□ 2
GPC1-202ENST00000420138 E9PSI1 815 aa27.53■■■□□ 2
GPC1-202ENST00000420138 TMPOP42166 694 aaKnown RBP27.53■■■□□ 2
GPC1-202ENST00000420138 PNNQ9H307 717 aaKnown RBP27.52■■■□□ 2
GPC1-202ENST00000420138 TRPM3Q9HCF6 1732 aaPredicted RBP27.52■■■□□ 2
GPC1-202ENST00000420138 SBNO1A3KN83 1393 aa27.51■■□□□ 1.99
GPC1-202ENST00000420138 HMOX1P09601 288 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms