RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 SH3BP2P78314 561 aa9.78□□□□□ -0.84
HMGB1P49-201ENST00000418882 PKD2L1Q9P0L9 805 aa9.78□□□□□ -0.84
HMGB1P49-201ENST00000418882 ZNF511Q8NB15 262 aa9.76□□□□□ -0.85
HMGB1P49-201ENST00000418882 FOXJ1Q92949 421 aa9.76□□□□□ -0.85
HMGB1P49-201ENST00000418882 CD2BP2O95400 341 aaKnown RBP9.75□□□□□ -0.85
HMGB1P49-201ENST00000418882 C4orf48Q5BLP8 95 aa9.75□□□□□ -0.85
HMGB1P49-201ENST00000418882 GDF9O60383 454 aa9.74□□□□□ -0.85
HMGB1P49-201ENST00000418882 OCSTAMPQ9BR26 566 aa9.74□□□□□ -0.85
HMGB1P49-201ENST00000418882 FKBPLQ9UIM3 349 aa9.74□□□□□ -0.85
HMGB1P49-201ENST00000418882 TNFRSF10AO00220 468 aa9.73□□□□□ -0.85
HMGB1P49-201ENST00000418882 SOCS7O14512 581 aa9.73□□□□□ -0.85
HMGB1P49-201ENST00000418882 WNT7BP56706 349 aa9.73□□□□□ -0.85
HMGB1P49-201ENST00000418882 FOXC1Q12948 553 aa9.73□□□□□ -0.85
HMGB1P49-201ENST00000418882 RC3H1Q5TC82 1133 aaKnown RBP9.72□□□□□ -0.85
HMGB1P49-201ENST00000418882 TBC1D2BQ9UPU7 963 aa9.72□□□□□ -0.85
HMGB1P49-201ENST00000418882 WNT7AO00755 349 aa9.71□□□□□ -0.86
HMGB1P49-201ENST00000418882 SH3BP5LQ7L8J4 393 aa9.71□□□□□ -0.86
HMGB1P49-201ENST00000418882 POM121Q96HA1 1249 aa9.71□□□□□ -0.86
HMGB1P49-201ENST00000418882 MRGPRX2Q96LB1 330 aa9.71□□□□□ -0.86
HMGB1P49-201ENST00000418882 SH3RF1Q7Z6J0 888 aa9.7□□□□□ -0.86
HMGB1P49-201ENST00000418882 SIAH2O43255 324 aa9.68□□□□□ -0.86
HMGB1P49-201ENST00000418882 NBPF14Q5TI25 921 aa9.68□□□□□ -0.86
HMGB1P49-201ENST00000418882 ARMC2Q8NEN0 867 aa9.68□□□□□ -0.86
HMGB1P49-201ENST00000418882 GDPD2Q9HCC8 539 aa9.68□□□□□ -0.86
HMGB1P49-201ENST00000418882 NDUFB9Q9Y6M9 179 aa9.68□□□□□ -0.86
HMGB1P49-201ENST00000418882 PRR20EP86478 221 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PRR20CP86479 221 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PRR20DP86480 221 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PRR20BP86481 221 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PRR20AP86496 221 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 IRF5Q13568 498 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PDXDC2PQ6P474 469 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 EHBP1Q8NDI1 1231 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 PDZRN3Q9UPQ7 1066 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 COG6Q9Y2V7 657 aa9.67□□□□□ -0.86
HMGB1P49-201ENST00000418882 ZC3H4Q9UPT8 1303 aaKnown RBP9.66□□□□□ -0.86
HMGB1P49-201ENST00000418882 GPKOWQ92917 476 aaPredicted RBP eCLIP9.66□□□□□ -0.86
HMGB1P49-201ENST00000418882 C1QTNF2Q9BXJ5 285 aa9.66□□□□□ -0.86
HMGB1P49-201ENST00000418882 CARD14Q9BXL6 1004 aa9.66□□□□□ -0.86
HMGB1P49-201ENST00000418882 TLL2Q9Y6L7 1015 aa9.66□□□□□ -0.86
HMGB1P49-201ENST00000418882 MAGEB6P1A0A0J9YX57 407 aa9.65□□□□□ -0.86
HMGB1P49-201ENST00000418882 FLIIQ13045 1269 aa9.65□□□□□ -0.86
HMGB1P49-201ENST00000418882 TOR4AQ9NXH8 423 aa9.65□□□□□ -0.86
HMGB1P49-201ENST00000418882 GTF3C3Q9Y5Q9 886 aa9.65□□□□□ -0.86
HMGB1P49-201ENST00000418882 FBXO45P0C2W1 286 aa9.64□□□□□ -0.87
HMGB1P49-201ENST00000418882 AGERQ15109 404 aa9.64□□□□□ -0.87
HMGB1P49-201ENST00000418882 BPHLQ86WA6 291 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P49-201ENST00000418882 GFRA3O60609 400 aa9.63□□□□□ -0.87
HMGB1P49-201ENST00000418882 VARSP26640 1264 aaKnown RBP9.63□□□□□ -0.87
HMGB1P49-201ENST00000418882 ERFEQ4G0M1 354 aa9.63□□□□□ -0.87
HMGB1P49-201ENST00000418882 CLUAP1Q96AJ1 413 aa9.63□□□□□ -0.87
HMGB1P49-201ENST00000418882 ARHGAP9Q9BRR9 750 aa9.63□□□□□ -0.87
HMGB1P49-201ENST00000418882 J3QL48 77 aa9.62□□□□□ -0.87
HMGB1P49-201ENST00000418882 ABL2P42684 1182 aa9.62□□□□□ -0.87
HMGB1P49-201ENST00000418882 ADAM32Q8TC27 787 aa9.62□□□□□ -0.87
HMGB1P49-201ENST00000418882 IRX2Q9BZI1 471 aaPredicted RBP9.61□□□□□ -0.87
HMGB1P49-201ENST00000418882 ZBBXA8MT70 800 aa9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 APBB1O00213 710 aa9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 SMPD1P17405 629 aa9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 UBTFP17480 764 aaKnown RBP9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 PTK2Q05397 1052 aa9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 SNIP1Q8TAD8 396 aaKnown RBP9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 GPSM3Q9Y4H4 160 aa9.6□□□□□ -0.87
HMGB1P49-201ENST00000418882 NRG2O14511 850 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P49-201ENST00000418882 TRMT44Q8IYL2 757 aaKnown RBP9.59□□□□□ -0.87
HMGB1P49-201ENST00000418882 CYP4X1Q8N118 509 aa9.59□□□□□ -0.87
HMGB1P49-201ENST00000418882 PNMA1Q8ND90 353 aa9.59□□□□□ -0.87
HMGB1P49-201ENST00000418882 FAM174AQ8TBP5 190 aa9.59□□□□□ -0.87
HMGB1P49-201ENST00000418882 LCE2BO14633 110 aa9.58□□□□□ -0.88
HMGB1P49-201ENST00000418882 ALDH1A1P00352 501 aa9.58□□□□□ -0.88
HMGB1P49-201ENST00000418882 TTC24A2A3L6 582 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P49-201ENST00000418882 VAC14Q08AM6 782 aa9.57□□□□□ -0.88
HMGB1P49-201ENST00000418882 NR1H3Q13133 447 aa9.57□□□□□ -0.88
HMGB1P49-201ENST00000418882 ZBTB33Q86T24 672 aa9.57□□□□□ -0.88
HMGB1P49-201ENST00000418882 CDK15Q96Q40 435 aa9.57□□□□□ -0.88
HMGB1P49-201ENST00000418882 GRM5P41594 1212 aa9.56□□□□□ -0.88
HMGB1P49-201ENST00000418882 ARID5BQ14865 1188 aa9.56□□□□□ -0.88
HMGB1P49-201ENST00000418882 FAM187AA6NFU0 413 aa9.55□□□□□ -0.88
HMGB1P49-201ENST00000418882 MPNDQ8N594 471 aa9.55□□□□□ -0.88
HMGB1P49-201ENST00000418882 NR3C2P08235 984 aa9.54□□□□□ -0.88
HMGB1P49-201ENST00000418882 FNBP4Q8N3X1 1017 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P49-201ENST00000418882 HPS1Q92902 700 aa9.54□□□□□ -0.88
HMGB1P49-201ENST00000418882 ADH1CP00326 375 aa9.53□□□□□ -0.88
HMGB1P49-201ENST00000418882 SLC10A4Q96EP9 437 aa9.53□□□□□ -0.88
HMGB1P49-201ENST00000418882 PRM3Q9NNZ6 103 aa9.53□□□□□ -0.88
HMGB1P49-201ENST00000418882 MAP4K5Q9Y4K4 846 aa9.53□□□□□ -0.88
HMGB1P49-201ENST00000418882 PCDHB9Q9Y5E1 797 aa9.53□□□□□ -0.88
HMGB1P49-201ENST00000418882 POM121CA8CG34 1229 aa9.52□□□□□ -0.89
HMGB1P49-201ENST00000418882 FSHRP23945 695 aa9.52□□□□□ -0.89
HMGB1P49-201ENST00000418882 VASH1Q7L8A9 365 aaPredicted RBP9.52□□□□□ -0.89
HMGB1P49-201ENST00000418882 RAD21O60216 631 aa9.51□□□□□ -0.89
HMGB1P49-201ENST00000418882 NNTQ13423 1086 aa9.51□□□□□ -0.89
HMGB1P49-201ENST00000418882 LAPTM4AQ15012 233 aa9.51□□□□□ -0.89
HMGB1P49-201ENST00000418882 PROSER2Q86WR7 435 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P49-201ENST00000418882 DZIP3Q86Y13 1208 aaKnown RBP9.5□□□□□ -0.89
HMGB1P49-201ENST00000418882 KCTD15Q96SI1 283 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P49-201ENST00000418882 AVPP01185 164 aa9.49□□□□□ -0.89
HMGB1P49-201ENST00000418882 INTS6LQ5JSJ4 861 aaKnown RBP9.49□□□□□ -0.89
HMGB1P49-201ENST00000418882 ADAMTS19Q8TE59 1207 aa9.49□□□□□ -0.89
HMGB1P49-201ENST00000418882 KLF16Q9BXK1 252 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms