RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	USP21	Q9UK80	565 aa		11.91	□□□□□ -0.5
CCT3-208	ENST00000415548	ABCA3	Q99758	1704 aa		11.91	□□□□□ -0.5
CCT3-208	ENST00000415548	CLSPN	Q9HAW4	1339 aa		11.9	□□□□□ -0.5
CCT3-208	ENST00000415548	RXRB	P28702	533 aa		11.9	□□□□□ -0.5
CCT3-208	ENST00000415548	QTRT2	Q9H974	415 aa	Known RBP	11.9	□□□□□ -0.5
CCT3-208	ENST00000415548	CCER1	Q8TC90	406 aa	Predicted RBP	11.89	□□□□□ -0.51
CCT3-208	ENST00000415548	CABP1	Q9NZU7	370 aa		11.89	□□□□□ -0.51
CCT3-208	ENST00000415548	SBNO2	Q9Y2G9	1366 aa		11.88	□□□□□ -0.51
CCT3-208	ENST00000415548	BCL9L	Q86UU0	1499 aa		11.88	□□□□□ -0.51
CCT3-208	ENST00000415548	RBM6	P78332	1123 aa	Known RBP	11.87	□□□□□ -0.51
CCT3-208	ENST00000415548	NUTM2G	Q5VZR2	741 aa		11.87	□□□□□ -0.51
CCT3-208	ENST00000415548	TRPC5	Q9UL62	973 aa	Predicted RBP	11.87	□□□□□ -0.51
CCT3-208	ENST00000415548	TIMELESS	Q9UNS1	1208 aa		11.87	□□□□□ -0.51
CCT3-208	ENST00000415548	ATRN	O75882	1429 aa		11.86	□□□□□ -0.51
CCT3-208	ENST00000415548	SLIT2	O94813	1529 aa		11.86	□□□□□ -0.51
CCT3-208	ENST00000415548	CRYBG1	Q9Y4K1	1723 aa		11.86	□□□□□ -0.51
CCT3-208	ENST00000415548	PPP4R3CP	Q6ZMV5	832 aa		11.86	□□□□□ -0.51
CCT3-208	ENST00000415548	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	ATAD2	Q6PL18	1390 aa		11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	ST20-MTHFS	A0A0A6YYL1	179 aa		11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	FAM83G	A6ND36	823 aa		11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	RGS12	O14924	1447 aa		11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	USP6	P35125	1406 aa		11.85	□□□□□ -0.51
CCT3-208	ENST00000415548	PLCH1	Q4KWH8	1693 aa		11.84	□□□□□ -0.51
CCT3-208	ENST00000415548	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.84	□□□□□ -0.51
CCT3-208	ENST00000415548	UNC5CL	Q8IV45	518 aa		11.84	□□□□□ -0.51
CCT3-208	ENST00000415548	ABTB2	Q8N961	1025 aa		11.84	□□□□□ -0.51
CCT3-208	ENST00000415548	TESK2	Q96S53	571 aa		11.84	□□□□□ -0.51
CCT3-208	ENST00000415548	BRD4	O60885	1362 aa	Predicted RBP	11.83	□□□□□ -0.52
CCT3-208	ENST00000415548	USP47	Q96K76	1375 aa		11.83	□□□□□ -0.52
CCT3-208	ENST00000415548	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.83	□□□□□ -0.52
CCT3-208	ENST00000415548	AKAP12	Q02952	1782 aa		11.82	□□□□□ -0.52
CCT3-208	ENST00000415548	GJD4	Q96KN9	370 aa	Predicted RBP	11.82	□□□□□ -0.52
CCT3-208	ENST00000415548	SSH2	Q76I76	1423 aa		11.82	□□□□□ -0.52
CCT3-208	ENST00000415548	NWD2	Q9ULI1	1742 aa		11.82	□□□□□ -0.52
CCT3-208	ENST00000415548	COL14A1	Q05707	1796 aa	Known RBP	11.82	□□□□□ -0.52
CCT3-208	ENST00000415548	KIAA0232	Q92628	1395 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	CPSF1	Q10570	1443 aa	Known RBP	11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	NLRP13	Q86W25	1043 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	TMC1	Q8TDI8	760 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	ZNF692	Q9BU19	519 aa	Predicted RBP	11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	PRDM11	Q9NQV5	511 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	BTG4	Q9NY30	223 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	USP19	O94966	1318 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	TTC21B	Q7Z4L5	1316 aa		11.81	□□□□□ -0.52
CCT3-208	ENST00000415548	GLI3	P10071	1580 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	NRK	Q7Z2Y5	1582 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	NLRP6	P59044	892 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	ZC3H6	P61129	1189 aa	Known RBP	11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	VPS72	Q15906	364 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	SLC12A5	Q9H2X9	1139 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	PIK3C2A	O00443	1686 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	NRAP	Q86VF7	1730 aa		11.8	□□□□□ -0.52
CCT3-208	ENST00000415548	KTN1	Q86UP2	1357 aa	Known RBP	11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	CD163L1	Q9NR16	1453 aa		11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	CHRNA2	Q15822	529 aa		11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	PUS7	Q96PZ0	661 aa	Known RBP	11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	CCDC9	Q9Y3X0	531 aa	Known RBP	11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	MON2	Q7Z3U7	1717 aa		11.79	□□□□□ -0.52
CCT3-208	ENST00000415548	GC	P02774	474 aa		11.78	□□□□□ -0.52
CCT3-208	ENST00000415548	SLC24A1	O60721	1099 aa		11.77	□□□□□ -0.53
CCT3-208	ENST00000415548	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.77	□□□□□ -0.53
CCT3-208	ENST00000415548	TTC21A	Q8NDW8	1320 aa		11.77	□□□□□ -0.53
CCT3-208	ENST00000415548	SLIT3	O75094	1523 aa		11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	TMF1	P82094	1093 aa		11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	TERF2IP	Q9NYB0	399 aa		11.76	□□□□□ -0.53
CCT3-208	ENST00000415548		A0A1W2PP64	1363 aa		11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	CPD	O75976	1380 aa		11.76	□□□□□ -0.53
CCT3-208	ENST00000415548	ZBTB7C	A1YPR0	619 aa		11.75	□□□□□ -0.53
CCT3-208	ENST00000415548	NME9	Q86XW9	330 aa		11.75	□□□□□ -0.53
CCT3-208	ENST00000415548	STRN4	Q9NRL3	753 aa		11.75	□□□□□ -0.53
CCT3-208	ENST00000415548	ZRANB1	Q9UGI0	708 aa		11.75	□□□□□ -0.53
CCT3-208	ENST00000415548	SOX12	O15370	315 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	SEPT12	Q8IYM1	358 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	SPATA31A5	Q5VU36	1347 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	SPATA31A7	Q8IWB4	1347 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	NINL	Q9Y2I6	1382 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	EDC4	Q6P2E9	1401 aa	Known RBP	11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	LMO7	Q8WWI1	1683 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	CAMTA1	Q9Y6Y1	1673 aa		11.74	□□□□□ -0.53
CCT3-208	ENST00000415548	ONECUT3	O60422	494 aa	Predicted RBP	11.73	□□□□□ -0.53
CCT3-208	ENST00000415548	FAM98C	Q17RN3	349 aa	Known RBP	11.73	□□□□□ -0.53
CCT3-208	ENST00000415548	BRWD3	Q6RI45	1802 aa		11.73	□□□□□ -0.53
CCT3-208	ENST00000415548	USP31	Q70CQ4	1352 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548		A0A0G2JS52	829 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548	EVA1C	P58658	441 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548	MYT1	Q01538	1121 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548	CDCA8	Q53HL2	280 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548	KCNH5	Q8NCM2	988 aa		11.72	□□□□□ -0.53
CCT3-208	ENST00000415548	EP400	Q96L91	3159 aa		11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	NFAT5	O94916	1531 aa		11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	AATK	Q6ZMQ8	1374 aa		11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	SPATA31A1	Q5TZJ5	1347 aa		11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	HSPA5	P11021	654 aa	Known RBP	11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	LARP1	Q6PKG0	1096 aa	Known RBP	11.71	□□□□□ -0.53
CCT3-208	ENST00000415548	USP54	Q70EL1	1684 aa		11.71	□□□□□ -0.54
CCT3-208	ENST00000415548	ANKRD36B	Q8N2N9	1353 aa		11.7	□□□□□ -0.54
CCT3-208	ENST00000415548	COL18A1	P39060	1754 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms