RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 CENPJQ9HC77 1338 aaPredicted RBP32.15■■■□□ 2.74
MSH6-202ENST00000411819 COL14A1Q05707 1796 aaKnown RBP32.14■■■□□ 2.74
MSH6-202ENST00000411819 FAM83GA6ND36 823 aa32.14■■■□□ 2.74
MSH6-202ENST00000411819 NEUROD1Q13562 356 aa32.14■■■□□ 2.74
MSH6-202ENST00000411819 NRAPQ86VF7 1730 aa32.14■■■□□ 2.74
MSH6-202ENST00000411819 TRPM1Q7Z4N2 1603 aa32.13■■■□□ 2.73
MSH6-202ENST00000411819 BRWD3Q6RI45 1802 aa32.12■■■□□ 2.73
MSH6-202ENST00000411819 CCDC61Q9Y6R9 512 aa32.11■■■□□ 2.73
MSH6-202ENST00000411819 ACEP12821 1306 aa32.1■■■□□ 2.73
MSH6-202ENST00000411819 SRPK2P78362 688 aaKnown RBP32.1■■■□□ 2.73
MSH6-202ENST00000411819 PHRF1Q9P1Y6 1649 aaKnown RBP32.1■■■□□ 2.73
MSH6-202ENST00000411819 POLR3AO14802 1390 aaPredicted RBP32.09■■■□□ 2.73
MSH6-202ENST00000411819 BTG4Q9NY30 223 aa32.08■■■□□ 2.73
MSH6-202ENST00000411819 SEPT12Q8IYM1 358 aa32.06■■■□□ 2.72
MSH6-202ENST00000411819 NBPF8Q3BBV2 869 aa32.05■■■□□ 2.72
MSH6-202ENST00000411819 PRDM11Q9NQV5 511 aa32.05■■■□□ 2.72
MSH6-202ENST00000411819 PPIP5K1Q6PFW1 1433 aa32.05■■■□□ 2.72
MSH6-202ENST00000411819 EP400Q96L91 3159 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 A0A0G2JS52 829 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 PLEKHG3A1L390 1219 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 MYT1Q01538 1121 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 NUTM2GQ5VZR2 741 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 CABP2Q9NPB3 220 aa32.04■■■□□ 2.72
MSH6-202ENST00000411819 ROCK2O75116 1388 aaKnown RBP32.03■■■□□ 2.72
MSH6-202ENST00000411819 KIAA0232Q92628 1395 aa31.99■■■□□ 2.71
MSH6-202ENST00000411819 CCDC125Q86Z20 511 aa31.98■■■□□ 2.71
MSH6-202ENST00000411819 FAM98CQ17RN3 349 aaKnown RBP31.97■■■□□ 2.71
MSH6-202ENST00000411819 NRKQ7Z2Y5 1582 aa31.97■■■□□ 2.71
MSH6-202ENST00000411819 ABTB2Q8N961 1025 aa31.96■■■□□ 2.71
MSH6-202ENST00000411819 ONECUT3O60422 494 aaPredicted RBP31.95■■■□□ 2.71
MSH6-202ENST00000411819 ZC3H6P61129 1189 aaKnown RBP31.95■■■□□ 2.71
MSH6-202ENST00000411819 CHRNA2Q15822 529 aa31.95■■■□□ 2.71
MSH6-202ENST00000411819 BLMP54132 1417 aaPredicted RBP31.94■■■□□ 2.7
MSH6-202ENST00000411819 KRT27Q7Z3Y8 459 aa31.94■■■□□ 2.7
MSH6-202ENST00000411819 EVC2Q86UK5 1308 aa31.93■■■□□ 2.7
MSH6-202ENST00000411819 SPATA31A5Q5VU36 1347 aa31.91■■■□□ 2.7
MSH6-202ENST00000411819 SPATA31A7Q8IWB4 1347 aa31.91■■■□□ 2.7
MSH6-202ENST00000411819 STRN4Q9NRL3 753 aa31.9■■■□□ 2.7
MSH6-202ENST00000411819 CABP1Q9NZU7 370 aa31.9■■■□□ 2.7
MSH6-202ENST00000411819 USP6P35125 1406 aa31.88■■■□□ 2.69
MSH6-202ENST00000411819 BRD4O60885 1362 aaPredicted RBP31.87■■■□□ 2.69
MSH6-202ENST00000411819 USP19O94966 1318 aa31.87■■■□□ 2.69
MSH6-202ENST00000411819 SF3B2Q13435 895 aaKnown RBP31.87■■■□□ 2.69
MSH6-202ENST00000411819 NLRP13Q86W25 1043 aa31.87■■■□□ 2.69
MSH6-202ENST00000411819 TONSLQ96HA7 1378 aa31.86■■■□□ 2.69
MSH6-202ENST00000411819 THSD7AQ9UPZ6 1657 aa31.86■■■□□ 2.69
MSH6-202ENST00000411819 ZRANB1Q9UGI0 708 aa31.83■■■□□ 2.69
MSH6-202ENST00000411819 SPATA31A1Q5TZJ5 1347 aa31.82■■■□□ 2.68
MSH6-202ENST00000411819 LMO7Q8WWI1 1683 aa31.82■■■□□ 2.68
MSH6-202ENST00000411819 CPDO75976 1380 aa31.81■■■□□ 2.68
MSH6-202ENST00000411819 DEFB132Q7Z7B7 95 aa31.81■■■□□ 2.68
MSH6-202ENST00000411819 SSH2Q76I76 1423 aa31.81■■■□□ 2.68
MSH6-202ENST00000411819 GCP02774 474 aa31.8■■■□□ 2.68
MSH6-202ENST00000411819 EVA1CP58658 441 aa31.8■■■□□ 2.68
MSH6-202ENST00000411819 CARD11Q9BXL7 1154 aa31.8■■■□□ 2.68
MSH6-202ENST00000411819 PIK3C2AO00443 1686 aa31.8■■■□□ 2.68
MSH6-202ENST00000411819 CAMTA1Q9Y6Y1 1673 aa31.8■■■□□ 2.68
MSH6-202ENST00000411819 AKAP12Q02952 1782 aa31.79■■■□□ 2.68
MSH6-202ENST00000411819 NLRP6P59044 892 aa31.78■■■□□ 2.68
MSH6-202ENST00000411819 USP35Q9P2H5 1018 aa31.78■■■□□ 2.68
MSH6-202ENST00000411819 ZBTB7CA1YPR0 619 aa31.77■■■□□ 2.68
MSH6-202ENST00000411819 TRIM26Q12899 539 aaPredicted RBP31.77■■■□□ 2.68
MSH6-202ENST00000411819 FAM182BQ5T319 152 aa31.76■■■□□ 2.67
MSH6-202ENST00000411819 SLIT3O75094 1523 aa31.75■■■□□ 2.67
MSH6-202ENST00000411819 RGPD1P0DJD0 1748 aa31.75■■■□□ 2.67
MSH6-202ENST00000411819 SBNO2Q9Y2G9 1366 aa31.72■■■□□ 2.67
MSH6-202ENST00000411819 LARP1Q6PKG0 1096 aaKnown RBP31.72■■■□□ 2.67
MSH6-202ENST00000411819 ZNF692Q9BU19 519 aaPredicted RBP31.71■■■□□ 2.67
MSH6-202ENST00000411819 COL5A2P05997 1499 aaPredicted RBP31.71■■■□□ 2.67
MSH6-202ENST00000411819 BAG6P46379 1132 aa31.7■■■□□ 2.67
MSH6-202ENST00000411819 TTC21BQ7Z4L5 1316 aa31.69■■■□□ 2.66
MSH6-202ENST00000411819 MON2Q7Z3U7 1717 aa31.68■■■□□ 2.66
MSH6-202ENST00000411819 KTN1Q86UP2 1357 aaKnown RBP31.68■■■□□ 2.66
MSH6-202ENST00000411819 CPSF1Q10570 1443 aaKnown RBP31.66■■■□□ 2.66
MSH6-202ENST00000411819 BARGINQ6ZT62 677 aa31.66■■■□□ 2.66
MSH6-202ENST00000411819 TCP11L2Q8N4U5 519 aa31.66■■■□□ 2.66
MSH6-202ENST00000411819 TNS1Q9HBL0 1735 aaKnown RBP31.66■■■□□ 2.66
MSH6-202ENST00000411819 TTC21AQ8NDW8 1320 aa31.65■■■□□ 2.66
MSH6-202ENST00000411819 AATKQ6ZMQ8 1374 aa31.64■■■□□ 2.66
MSH6-202ENST00000411819 SOX12O15370 315 aa31.63■■■□□ 2.65
MSH6-202ENST00000411819 CRB1P82279 1406 aa31.63■■■□□ 2.65
MSH6-202ENST00000411819 PDE3BQ13370 1112 aa31.61■■■□□ 2.65
MSH6-202ENST00000411819 COL18A1P39060 1754 aa31.61■■■□□ 2.65
MSH6-202ENST00000411819 FAM196AQ6ZSG2 479 aa31.6■■■□□ 2.65
MSH6-202ENST00000411819 TMC1Q8TDI8 760 aa31.6■■■□□ 2.65
MSH6-202ENST00000411819 THRAP3Q9Y2W1 955 aaKnown RBP31.6■■■□□ 2.65
MSH6-202ENST00000411819 PARP4Q9UKK3 1724 aaKnown RBP31.6■■■□□ 2.65
MSH6-202ENST00000411819 KCNH5Q8NCM2 988 aa31.59■■■□□ 2.65
MSH6-202ENST00000411819 EN1Q05925 392 aaPredicted RBP31.58■■■□□ 2.65
MSH6-202ENST00000411819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.57■■■□□ 2.64
MSH6-202ENST00000411819 RGPD5Q99666 1765 aa31.57■■■□□ 2.64
MSH6-202ENST00000411819 CD163L1Q9NR16 1453 aa31.55■■■□□ 2.64
MSH6-202ENST00000411819 TRIM37O94972 964 aa31.55■■■□□ 2.64
MSH6-202ENST00000411819 TOM1L2Q6ZVM7 507 aa31.55■■■□□ 2.64
MSH6-202ENST00000411819 NFAT5O94916 1531 aa31.54■■■□□ 2.64
MSH6-202ENST00000411819 HDGFL2Q7Z4V5 671 aaPredicted RBP31.54■■■□□ 2.64
MSH6-202ENST00000411819 DISP2A7MBM2 1401 aa31.54■■■□□ 2.64
MSH6-202ENST00000411819 ARHGEF25Q86VW2 580 aa31.53■■■□□ 2.64
MSH6-202ENST00000411819 WNK3Q9BYP7 1800 aa31.53■■■□□ 2.64
MSH6-202ENST00000411819 AXIN2Q9Y2T1 843 aa31.52■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 166.2 ms