RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 TRPM1Q7Z4N2 1603 aa18.98■□□□□ 0.63
SDF4-203ENST00000403997 EVC2Q86UK5 1308 aa18.98■□□□□ 0.63
SDF4-203ENST00000403997 CCDC9Q9Y3X0 531 aaKnown RBP18.97■□□□□ 0.63
SDF4-203ENST00000403997 NUTM2GQ5VZR2 741 aa18.96■□□□□ 0.63
SDF4-203ENST00000403997 ALS2Q96Q42 1657 aa18.95■□□□□ 0.62
SDF4-203ENST00000403997 PPIP5K1Q6PFW1 1433 aa18.95■□□□□ 0.62
SDF4-203ENST00000403997 CARD11Q9BXL7 1154 aa18.95■□□□□ 0.62
SDF4-203ENST00000403997 CABP1Q9NZU7 370 aa18.95■□□□□ 0.62
SDF4-203ENST00000403997 QRICH2Q9H0J4 1663 aa18.95■□□□□ 0.62
SDF4-203ENST00000403997 VPS72Q15906 364 aa18.94■□□□□ 0.62
SDF4-203ENST00000403997 ABTB2Q8N961 1025 aa18.94■□□□□ 0.62
SDF4-203ENST00000403997 BTG4Q9NY30 223 aa18.93■□□□□ 0.62
SDF4-203ENST00000403997 RALGAPBQ86X10 1494 aa18.92■□□□□ 0.62
SDF4-203ENST00000403997 ABCA3Q99758 1704 aa18.92■□□□□ 0.62
SDF4-203ENST00000403997 PRDM11Q9NQV5 511 aa18.92■□□□□ 0.62
SDF4-203ENST00000403997 ATAD2Q6PL18 1390 aa18.92■□□□□ 0.62
SDF4-203ENST00000403997 TOPAZ1Q8N9V7 1692 aa18.92■□□□□ 0.62
SDF4-203ENST00000403997 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.91■□□□□ 0.62
SDF4-203ENST00000403997 ZC3H6P61129 1189 aaKnown RBP18.9■□□□□ 0.62
SDF4-203ENST00000403997 NLRP13Q86W25 1043 aa18.89■□□□□ 0.61
SDF4-203ENST00000403997 CHRNA2Q15822 529 aa18.88■□□□□ 0.61
SDF4-203ENST00000403997 SEPT12Q8IYM1 358 aa18.88■□□□□ 0.61
SDF4-203ENST00000403997 PLCH1Q4KWH8 1693 aa18.88■□□□□ 0.61
SDF4-203ENST00000403997 NWD2Q9ULI1 1742 aa18.88■□□□□ 0.61
SDF4-203ENST00000403997 GLI3P10071 1580 aa18.87■□□□□ 0.61
SDF4-203ENST00000403997 KIAA0232Q92628 1395 aa18.87■□□□□ 0.61
SDF4-203ENST00000403997 BRD4O60885 1362 aaPredicted RBP18.86■□□□□ 0.61
SDF4-203ENST00000403997 PCGF6Q9BYE7 350 aa18.86■□□□□ 0.61
SDF4-203ENST00000403997 A0A0G2JS52 829 aa18.85■□□□□ 0.61
SDF4-203ENST00000403997 ONECUT3O60422 494 aaPredicted RBP18.85■□□□□ 0.61
SDF4-203ENST00000403997 NLRP6P59044 892 aa18.85■□□□□ 0.61
SDF4-203ENST00000403997 MYT1Q01538 1121 aa18.85■□□□□ 0.61
SDF4-203ENST00000403997 ZNF692Q9BU19 519 aaPredicted RBP18.85■□□□□ 0.61
SDF4-203ENST00000403997 COL14A1Q05707 1796 aaKnown RBP18.85■□□□□ 0.61
SDF4-203ENST00000403997 USP6P35125 1406 aa18.84■□□□□ 0.61
SDF4-203ENST00000403997 GCP02774 474 aa18.84■□□□□ 0.61
SDF4-203ENST00000403997 FAM98CQ17RN3 349 aaKnown RBP18.84■□□□□ 0.61
SDF4-203ENST00000403997 USP19O94966 1318 aa18.83■□□□□ 0.61
SDF4-203ENST00000403997 EVA1CP58658 441 aa18.83■□□□□ 0.6
SDF4-203ENST00000403997 STRN4Q9NRL3 753 aa18.83■□□□□ 0.6
SDF4-203ENST00000403997 CRYBG1Q9Y4K1 1723 aa18.83■□□□□ 0.6
SDF4-203ENST00000403997 SBNO2Q9Y2G9 1366 aa18.82■□□□□ 0.6
SDF4-203ENST00000403997 SPATA31A5Q5VU36 1347 aa18.82■□□□□ 0.6
SDF4-203ENST00000403997 SPATA31A7Q8IWB4 1347 aa18.82■□□□□ 0.6
SDF4-203ENST00000403997 KRT27Q7Z3Y8 459 aa18.8■□□□□ 0.6
SDF4-203ENST00000403997 CCDC125Q86Z20 511 aa18.8■□□□□ 0.6
SDF4-203ENST00000403997 TMC1Q8TDI8 760 aa18.8■□□□□ 0.6
SDF4-203ENST00000403997 TTC21BQ7Z4L5 1316 aa18.79■□□□□ 0.6
SDF4-203ENST00000403997 PHRF1Q9P1Y6 1649 aaKnown RBP18.79■□□□□ 0.6
SDF4-203ENST00000403997 ZBTB7CA1YPR0 619 aa18.79■□□□□ 0.6
SDF4-203ENST00000403997 NRAPQ86VF7 1730 aa18.79■□□□□ 0.6
SDF4-203ENST00000403997 SSH2Q76I76 1423 aa18.78■□□□□ 0.6
SDF4-203ENST00000403997 ST20-MTHFSA0A0A6YYL1 179 aa18.78■□□□□ 0.6
SDF4-203ENST00000403997 CPDO75976 1380 aa18.78■□□□□ 0.6
SDF4-203ENST00000403997 KTN1Q86UP2 1357 aaKnown RBP18.78■□□□□ 0.6
SDF4-203ENST00000403997 SPATA31A1Q5TZJ5 1347 aa18.76■□□□□ 0.59
SDF4-203ENST00000403997 TTC21AQ8NDW8 1320 aa18.76■□□□□ 0.59
SDF4-203ENST00000403997 SLC12A5Q9H2X9 1139 aa18.76■□□□□ 0.59
SDF4-203ENST00000403997 USP35Q9P2H5 1018 aa18.76■□□□□ 0.59
SDF4-203ENST00000403997 CPSF1Q10570 1443 aaKnown RBP18.75■□□□□ 0.59
SDF4-203ENST00000403997 BRWD3Q6RI45 1802 aa18.75■□□□□ 0.59
SDF4-203ENST00000403997 NRKQ7Z2Y5 1582 aa18.75■□□□□ 0.59
SDF4-203ENST00000403997 EP400Q96L91 3159 aa18.74■□□□□ 0.59
SDF4-203ENST00000403997 SOX12O15370 315 aa18.74■□□□□ 0.59
SDF4-203ENST00000403997 SLC24A1O60721 1099 aa18.74■□□□□ 0.59
SDF4-203ENST00000403997 LARP1Q6PKG0 1096 aaKnown RBP18.74■□□□□ 0.59
SDF4-203ENST00000403997 HDGFL2Q7Z4V5 671 aaPredicted RBP18.74■□□□□ 0.59
SDF4-203ENST00000403997 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.74■□□□□ 0.59
SDF4-203ENST00000403997 PUS7Q96PZ0 661 aaKnown RBP18.74■□□□□ 0.59
SDF4-203ENST00000403997 TESK2Q96S53 571 aa18.74■□□□□ 0.59
SDF4-203ENST00000403997 CLSPNQ9HAW4 1339 aa18.74■□□□□ 0.59
SDF4-203ENST00000403997 CAMTA1Q9Y6Y1 1673 aa18.73■□□□□ 0.59
SDF4-203ENST00000403997 SF3B2Q13435 895 aaKnown RBP18.73■□□□□ 0.59
SDF4-203ENST00000403997 TIMELESSQ9UNS1 1208 aa18.73■□□□□ 0.59
SDF4-203ENST00000403997 KCNH5Q8NCM2 988 aa18.72■□□□□ 0.59
SDF4-203ENST00000403997 BLMP54132 1417 aaPredicted RBP18.72■□□□□ 0.59
SDF4-203ENST00000403997 FAM182BQ5T319 152 aa18.71■□□□□ 0.59
SDF4-203ENST00000403997 TERF2IPQ9NYB0 399 aa18.71■□□□□ 0.59
SDF4-203ENST00000403997 AKAP12Q02952 1782 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 AATKQ6ZMQ8 1374 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 SLIT3O75094 1523 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 BARGINQ6ZT62 677 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 TCP11L2Q8N4U5 519 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 ZRANB1Q9UGI0 708 aa18.7■□□□□ 0.58
SDF4-203ENST00000403997 PIK3C2AO00443 1686 aa18.69■□□□□ 0.58
SDF4-203ENST00000403997 ARHGEF25Q86VW2 580 aa18.69■□□□□ 0.58
SDF4-203ENST00000403997 USP47Q96K76 1375 aa18.68■□□□□ 0.58
SDF4-203ENST00000403997 DEFB132Q7Z7B7 95 aa18.68■□□□□ 0.58
SDF4-203ENST00000403997 NME9Q86XW9 330 aa18.68■□□□□ 0.58
SDF4-203ENST00000403997 CCER1Q8TC90 406 aaPredicted RBP18.68■□□□□ 0.58
SDF4-203ENST00000403997 LMO7Q8WWI1 1683 aa18.67■□□□□ 0.58
SDF4-203ENST00000403997 CD163L1Q9NR16 1453 aa18.67■□□□□ 0.58
SDF4-203ENST00000403997 TMF1P82094 1093 aa18.67■□□□□ 0.58
SDF4-203ENST00000403997 AXIN2Q9Y2T1 843 aa18.67■□□□□ 0.58
SDF4-203ENST00000403997 THRAP3Q9Y2W1 955 aaKnown RBP18.67■□□□□ 0.58
SDF4-203ENST00000403997 COL5A2P05997 1499 aaPredicted RBP18.66■□□□□ 0.58
SDF4-203ENST00000403997 PDE3BQ13370 1112 aa18.66■□□□□ 0.58
SDF4-203ENST00000403997 TOM1L2Q6ZVM7 507 aa18.66■□□□□ 0.58
SDF4-203ENST00000403997 A0A1W2PP64 1363 aa18.65■□□□□ 0.58
SDF4-203ENST00000403997 EDC4Q6P2E9 1401 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms