RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SKOR2Q2VWA4 1001 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-204ENST00000397545 FAM13BQ9NYF5 915 aa13.24□□□□□ -0.29
CCDC40-204ENST00000397545 ARAP3Q8WWN8 1544 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 MADDQ8WXG6 1647 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 COG3Q96JB2 828 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 ABCA9Q8IUA7 1624 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 KIF16BQ96L93 1317 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-204ENST00000397545 IDI1Q13907 227 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 ANO2Q9NQ90 1003 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 SPHKAPQ2M3C7 1700 aa13.23□□□□□ -0.29
CCDC40-204ENST00000397545 EIF2S2P20042 333 aaKnown RBP13.22□□□□□ -0.29
CCDC40-204ENST00000397545 GORABQ5T7V8 394 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 TSR2Q969E8 191 aaKnown RBP13.22□□□□□ -0.29
CCDC40-204ENST00000397545 MCTP1Q6DN14 999 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 TET3O43151 1660 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 NPATQ14207 1427 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 TRAK2O60296 914 aa13.22□□□□□ -0.29
CCDC40-204ENST00000397545 EXOSC9Q06265 439 aaKnown RBP13.21□□□□□ -0.29
CCDC40-204ENST00000397545 FBXO31Q5XUX0 539 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-204ENST00000397545 C1orf115Q9H7X2 142 aa13.21□□□□□ -0.29
CCDC40-204ENST00000397545 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
CCDC40-204ENST00000397545 POGZQ7Z3K3 1410 aa13.21□□□□□ -0.29
CCDC40-204ENST00000397545 INO80Q9ULG1 1556 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-204ENST00000397545 NGEFQ8N5V2 710 aa13.21□□□□□ -0.3
CCDC40-204ENST00000397545 RNF214Q8ND24 703 aa13.21□□□□□ -0.3
CCDC40-204ENST00000397545 ASXL1Q8IXJ9 1541 aa13.2□□□□□ -0.3
CCDC40-204ENST00000397545 NSD3Q9BZ95 1437 aa13.2□□□□□ -0.3
CCDC40-204ENST00000397545 REC8O95072 547 aa13.2□□□□□ -0.3
CCDC40-204ENST00000397545 GPATCH3Q96I76 525 aa13.2□□□□□ -0.3
CCDC40-204ENST00000397545 FAM43AQ8N2R8 423 aa13.19□□□□□ -0.3
CCDC40-204ENST00000397545 HTATSF1O43719 755 aaKnown RBP13.19□□□□□ -0.3
CCDC40-204ENST00000397545 PHF14O94880 888 aa13.19□□□□□ -0.3
CCDC40-204ENST00000397545 API5Q9BZZ5 524 aaKnown RBP13.19□□□□□ -0.3
CCDC40-204ENST00000397545 DUSP27Q5VZP5 1158 aa13.19□□□□□ -0.3
CCDC40-204ENST00000397545 FKBP5Q13451 457 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-204ENST00000397545 CEBPAP49715 358 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-204ENST00000397545 SPINK5Q9NQ38 1064 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-204ENST00000397545 BLMP54132 1417 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-204ENST00000397545 ERVK-7P63135 1459 aa13.17□□□□□ -0.3
CCDC40-204ENST00000397545 SF3A1Q15459 793 aaKnown RBP13.17□□□□□ -0.3
CCDC40-204ENST00000397545 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-204ENST00000397545 ISY1Q9ULR0 285 aaKnown RBP13.17□□□□□ -0.3
CCDC40-204ENST00000397545 EFCAB6Q5THR3 1501 aa13.17□□□□□ -0.3
CCDC40-204ENST00000397545 LAMC1P11047 1609 aa13.17□□□□□ -0.3
CCDC40-204ENST00000397545 KIDINS220Q9ULH0 1771 aa13.16□□□□□ -0.3
CCDC40-204ENST00000397545 CREBRFQ8IUR6 639 aa13.16□□□□□ -0.3
CCDC40-204ENST00000397545 DIAPH3Q9NSV4 1193 aa13.16□□□□□ -0.3
CCDC40-204ENST00000397545 CSPP1Q1MSJ5 1256 aa13.16□□□□□ -0.3
CCDC40-204ENST00000397545 CEP152O94986 1710 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 MRE11P49959 708 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 TAF7LQ5H9L4 462 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 YEATS2Q9ULM3 1422 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 VPS37CA5D8V6 355 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-204ENST00000397545 SLFN5Q08AF3 891 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 PDE3AQ14432 1141 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 PPRC1Q5VV67 1664 aaKnown RBP13.15□□□□□ -0.3
CCDC40-204ENST00000397545 MPNDQ8N594 471 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 PRAM1Q96QH2 718 aa13.15□□□□□ -0.3
CCDC40-204ENST00000397545 RNF17Q9BXT8 1623 aaKnown RBP13.15□□□□□ -0.3
CCDC40-204ENST00000397545 H3BQV1 296 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 IFFO2Q5TF58 517 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 CAVIN1Q6NZI2 390 aaKnown RBP13.14□□□□□ -0.31
CCDC40-204ENST00000397545 TOMM22Q9NS69 142 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 RPGRIP1LQ68CZ1 1315 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 NASPP49321 788 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-204ENST00000397545 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC40-204ENST00000397545 ZNF592Q92610 1267 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 TEFQ10587 303 aa13.14□□□□□ -0.31
CCDC40-204ENST00000397545 GNAI1P63096 354 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 INTS3Q68E01 1043 aaKnown RBP13.13□□□□□ -0.31
CCDC40-204ENST00000397545 DEPDC5O75140 1603 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 ABCA6Q8N139 1617 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 MAP3K4Q9Y6R4 1608 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 PRKAR2BP31323 418 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 NUCB2P80303 420 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 MROH1Q8NDA8 1641 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 FAM184AQ8NB25 1140 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 C9orf78Q9NZ63 289 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-204ENST00000397545 R3HCC1Q9Y3T6 440 aaKnown RBP13.13□□□□□ -0.31
CCDC40-204ENST00000397545 KIF1BO60333 1816 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 BECN2A8MW95 431 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 CHMP4AQ9BY43 222 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 NOB1Q9ULX3 412 aaKnown RBP13.13□□□□□ -0.31
CCDC40-204ENST00000397545 HDAC5Q9UQL6 1122 aa13.13□□□□□ -0.31
CCDC40-204ENST00000397545 VWDEQ8N2E2 1590 aa13.12□□□□□ -0.31
CCDC40-204ENST00000397545 IQGAP1P46940 1657 aa13.12□□□□□ -0.31
CCDC40-204ENST00000397545 ATP6V1DQ9Y5K8 247 aa13.12□□□□□ -0.31
CCDC40-204ENST00000397545 MYOM2P54296 1465 aa13.12□□□□□ -0.31
CCDC40-204ENST00000397545 MLH3Q9UHC1 1453 aa13.12□□□□□ -0.31
CCDC40-204ENST00000397545 RBM33Q96EV2 1170 aaKnown RBP13.12□□□□□ -0.31
CCDC40-204ENST00000397545 SYNMO15061 1565 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 CDC45O75419 566 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 SLC52A1Q9NWF4 448 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 PIK3C2GO75747 1445 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 ZMYM4Q5VZL5 1548 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 GOLGA6L19H0YKK7 550 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 SLC26A8Q96RN1 970 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms