RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ABCA3Q99758 1704 aa30.43■■■□□ 2.46
CLN3-207ENST00000395653 AKAP12Q02952 1782 aa30.43■■■□□ 2.46
CLN3-207ENST00000395653 MARF1Q9Y4F3 1742 aaKnown RBP30.41■■■□□ 2.46
CLN3-207ENST00000395653 SSH2Q76I76 1423 aa30.41■■■□□ 2.46
CLN3-207ENST00000395653 C8orf37Q96NL8 207 aa30.41■■■□□ 2.46
CLN3-207ENST00000395653 NINLQ9Y2I6 1382 aa30.41■■■□□ 2.46
CLN3-207ENST00000395653 CABLES1Q8TDN4 633 aa30.4■■■□□ 2.46
CLN3-207ENST00000395653 CDCA8Q53HL2 280 aa30.39■■■□□ 2.46
CLN3-207ENST00000395653 TMC1Q8TDI8 760 aa30.39■■■□□ 2.46
CLN3-207ENST00000395653 CD163L1Q9NR16 1453 aa30.39■■■□□ 2.46
CLN3-207ENST00000395653 HAP1P54257 671 aaPredicted RBP30.39■■■□□ 2.45
CLN3-207ENST00000395653 CRYBG1Q9Y4K1 1723 aa30.38■■■□□ 2.45
CLN3-207ENST00000395653 HSPA5P11021 654 aaKnown RBP30.38■■■□□ 2.45
CLN3-207ENST00000395653 ZNF772Q68DY9 489 aaPredicted RBP30.38■■■□□ 2.45
CLN3-207ENST00000395653 SLC12A5Q9H2X9 1139 aa30.38■■■□□ 2.45
CLN3-207ENST00000395653 AFF2P51816 1311 aa30.38■■■□□ 2.45
CLN3-207ENST00000395653 MON2Q7Z3U7 1717 aa30.37■■■□□ 2.45
CLN3-207ENST00000395653 NGLY1Q96IV0 654 aa30.37■■■□□ 2.45
CLN3-207ENST00000395653 KTN1Q86UP2 1357 aaKnown RBP30.37■■■□□ 2.45
CLN3-207ENST00000395653 NRKQ7Z2Y5 1582 aa30.36■■■□□ 2.45
CLN3-207ENST00000395653 ABTB2Q8N961 1025 aa30.36■■■□□ 2.45
CLN3-207ENST00000395653 PLEKHG5O94827 1062 aa30.35■■■□□ 2.45
CLN3-207ENST00000395653 HDGFL2Q7Z4V5 671 aaPredicted RBP30.34■■■□□ 2.45
CLN3-207ENST00000395653 TERF2IPQ9NYB0 399 aa30.34■■■□□ 2.45
CLN3-207ENST00000395653 TTC21BQ7Z4L5 1316 aa30.32■■■□□ 2.44
CLN3-207ENST00000395653 FNBP4Q8N3X1 1017 aaPredicted RBP30.32■■■□□ 2.44
CLN3-207ENST00000395653 TTC21AQ8NDW8 1320 aa30.31■■■□□ 2.44
CLN3-207ENST00000395653 NUTM2GQ5VZR2 741 aa30.31■■■□□ 2.44
CLN3-207ENST00000395653 POTEAQ6S8J7 498 aa30.31■■■□□ 2.44
CLN3-207ENST00000395653 ILDR2Q71H61 639 aa30.31■■■□□ 2.44
CLN3-207ENST00000395653 PHRF1Q9P1Y6 1649 aaKnown RBP30.31■■■□□ 2.44
CLN3-207ENST00000395653 A0A1W2PP64 1363 aa30.31■■■□□ 2.44
CLN3-207ENST00000395653 NLRP13Q86W25 1043 aa30.3■■■□□ 2.44
CLN3-207ENST00000395653 USP19O94966 1318 aa30.3■■■□□ 2.44
CLN3-207ENST00000395653 PIK3C2AO00443 1686 aa30.29■■■□□ 2.44
CLN3-207ENST00000395653 EDC4Q6P2E9 1401 aaKnown RBP30.27■■■□□ 2.44
CLN3-207ENST00000395653 SLIT2O94813 1529 aa30.27■■■□□ 2.44
CLN3-207ENST00000395653 USP21Q9UK80 565 aa30.26■■■□□ 2.43
CLN3-207ENST00000395653 ANKRD36BQ8N2N9 1353 aa30.26■■■□□ 2.43
CLN3-207ENST00000395653 NLRP6P59044 892 aa30.25■■■□□ 2.43
CLN3-207ENST00000395653 BCL9LQ86UU0 1499 aa30.24■■■□□ 2.43
CLN3-207ENST00000395653 MYOM1P52179 1685 aa30.23■■■□□ 2.43
CLN3-207ENST00000395653 SLIT3O75094 1523 aa30.22■■■□□ 2.43
CLN3-207ENST00000395653 PLCH1Q4KWH8 1693 aa30.22■■■□□ 2.43
CLN3-207ENST00000395653 COL14A1Q05707 1796 aaKnown RBP30.21■■■□□ 2.43
CLN3-207ENST00000395653 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.21■■■□□ 2.43
CLN3-207ENST00000395653 NWD2Q9ULI1 1742 aa30.21■■■□□ 2.43
CLN3-207ENST00000395653 FAM83GA6ND36 823 aa30.21■■■□□ 2.43
CLN3-207ENST00000395653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.21■■■□□ 2.43
CLN3-207ENST00000395653 QTRT2Q9H974 415 aaKnown RBP30.2■■■□□ 2.42
CLN3-207ENST00000395653 KIAA0232Q92628 1395 aa30.19■■■□□ 2.42
CLN3-207ENST00000395653 GCP02774 474 aa30.19■■■□□ 2.42
CLN3-207ENST00000395653 USP54Q70EL1 1684 aa30.18■■■□□ 2.42
CLN3-207ENST00000395653 USP31Q70CQ4 1352 aa30.18■■■□□ 2.42
CLN3-207ENST00000395653 ATRNO75882 1429 aa30.18■■■□□ 2.42
CLN3-207ENST00000395653 UNC5CLQ8IV45 518 aa30.18■■■□□ 2.42
CLN3-207ENST00000395653 PRDM11Q9NQV5 511 aa30.18■■■□□ 2.42
CLN3-207ENST00000395653 TRPC5Q9UL62 973 aaPredicted RBP30.18■■■□□ 2.42
CLN3-207ENST00000395653 CPDO75976 1380 aa30.17■■■□□ 2.42
CLN3-207ENST00000395653 ZC3H6P61129 1189 aaKnown RBP30.16■■■□□ 2.42
CLN3-207ENST00000395653 NME9Q86XW9 330 aa30.15■■■□□ 2.42
CLN3-207ENST00000395653 RXRBP28702 533 aa30.14■■■□□ 2.42
CLN3-207ENST00000395653 RBM6P78332 1123 aaKnown RBP30.13■■■□□ 2.41
CLN3-207ENST00000395653 KCNH5Q8NCM2 988 aa30.13■■■□□ 2.41
CLN3-207ENST00000395653 POLR3GLQ9BT43 218 aa30.13■■■□□ 2.41
CLN3-207ENST00000395653 NRAPQ86VF7 1730 aa30.12■■■□□ 2.41
CLN3-207ENST00000395653 BTG4Q9NY30 223 aa30.12■■■□□ 2.41
CLN3-207ENST00000395653 CDK12Q9NYV4 1490 aaPredicted RBP30.11■■■□□ 2.41
CLN3-207ENST00000395653 C11orf95C9JLR9 678 aaPredicted RBP30.11■■■□□ 2.41
CLN3-207ENST00000395653 OVOS2A0A0J9YW53 1432 aa30.1■■■□□ 2.41
CLN3-207ENST00000395653 OVOS2Q6IE36 1432 aa30.1■■■□□ 2.41
CLN3-207ENST00000395653 ZRANB1Q9UGI0 708 aa30.1■■■□□ 2.41
CLN3-207ENST00000395653 CHRNA2Q15822 529 aa30.09■■■□□ 2.41
CLN3-207ENST00000395653 NFAT5O94916 1531 aa30.08■■■□□ 2.41
CLN3-207ENST00000395653 VPS72Q15906 364 aa30.07■■■□□ 2.4
CLN3-207ENST00000395653 LMO7Q8WWI1 1683 aa30.07■■■□□ 2.4
CLN3-207ENST00000395653 GJD4Q96KN9 370 aaPredicted RBP30.06■■■□□ 2.4
CLN3-207ENST00000395653 CARD14Q9BXL6 1004 aa30.05■■■□□ 2.4
CLN3-207ENST00000395653 NSD3Q9BZ95 1437 aa30.04■■■□□ 2.4
CLN3-207ENST00000395653 AATKQ6ZMQ8 1374 aa30.03■■■□□ 2.4
CLN3-207ENST00000395653 KIF7Q2M1P5 1343 aa30.03■■■□□ 2.4
CLN3-207ENST00000395653 CAMTA1Q9Y6Y1 1673 aa30.03■■■□□ 2.4
CLN3-207ENST00000395653 ARHGEF25Q86VW2 580 aa30.03■■■□□ 2.4
CLN3-207ENST00000395653 GLI3P10071 1580 aa30.02■■■□□ 2.4
CLN3-207ENST00000395653 SOX12O15370 315 aa30.02■■■□□ 2.4
CLN3-207ENST00000395653 COG3Q96JB2 828 aa30.02■■■□□ 2.4
CLN3-207ENST00000395653 FYB1O15117 783 aa30.01■■■□□ 2.39
CLN3-207ENST00000395653 RGS12O14924 1447 aa30■■■□□ 2.39
CLN3-207ENST00000395653 KIF20BQ96Q89 1820 aa30■■■□□ 2.39
CLN3-207ENST00000395653 ABCC6O95255 1503 aa29.99■■■□□ 2.39
CLN3-207ENST00000395653 COL18A1P39060 1754 aa29.99■■■□□ 2.39
CLN3-207ENST00000395653 ZBTB7CA1YPR0 619 aa29.98■■■□□ 2.39
CLN3-207ENST00000395653 CCDC9Q9Y3X0 531 aaKnown RBP29.98■■■□□ 2.39
CLN3-207ENST00000395653 SOCS7O14512 581 aa29.97■■■□□ 2.39
CLN3-207ENST00000395653 GGNBP2Q9H3C7 697 aa29.96■■■□□ 2.39
CLN3-207ENST00000395653 PANK3Q9H999 370 aa29.96■■■□□ 2.39
CLN3-207ENST00000395653 COL5A2P05997 1499 aaPredicted RBP29.96■■■□□ 2.39
CLN3-207ENST00000395653 STRN4Q9NRL3 753 aa29.96■■■□□ 2.39
CLN3-207ENST00000395653 CGNL1Q0VF96 1302 aa29.94■■■□□ 2.38
CLN3-207ENST00000395653 SPATA31A5Q5VU36 1347 aa29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms