RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 BAG6P46379 1132 aa23.44■■□□□ 1.34
VCX3A-201ENST00000381089 NRAPQ86VF7 1730 aa23.43■■□□□ 1.34
VCX3A-201ENST00000381089 FAM98CQ17RN3 349 aaKnown RBP23.43■■□□□ 1.34
VCX3A-201ENST00000381089 ALS2Q96Q42 1657 aa23.43■■□□□ 1.34
VCX3A-201ENST00000381089 PAK3O75914 559 aaPredicted RBP23.42■■□□□ 1.34
VCX3A-201ENST00000381089 PRR36Q9H6K5 1346 aa23.41■■□□□ 1.34
VCX3A-201ENST00000381089 PRDM11Q9NQV5 511 aa23.39■■□□□ 1.33
VCX3A-201ENST00000381089 ITSN1Q15811 1721 aa23.38■■□□□ 1.33
VCX3A-201ENST00000381089 SPATA31A5Q5VU36 1347 aa23.36■■□□□ 1.33
VCX3A-201ENST00000381089 SPATA31A7Q8IWB4 1347 aa23.36■■□□□ 1.33
VCX3A-201ENST00000381089 NUDT16Q96DE0 195 aaKnown RBP23.34■■□□□ 1.33
VCX3A-201ENST00000381089 RGPD1P0DJD0 1748 aa23.33■■□□□ 1.33
VCX3A-201ENST00000381089 ARHGEF28Q8N1W1 1705 aaKnown RBP23.33■■□□□ 1.32
VCX3A-201ENST00000381089 LRP5O75197 1615 aa23.33■■□□□ 1.32
VCX3A-201ENST00000381089 ATP7BP35670 1465 aa23.32■■□□□ 1.32
VCX3A-201ENST00000381089 HRCP23327 699 aa23.32■■□□□ 1.32
VCX3A-201ENST00000381089 CRYBG1Q9Y4K1 1723 aa23.32■■□□□ 1.32
VCX3A-201ENST00000381089 KIAA0232Q92628 1395 aa23.29■■□□□ 1.32
VCX3A-201ENST00000381089 PSDA5PKW4 1024 aaPredicted RBP23.29■■□□□ 1.32
VCX3A-201ENST00000381089 THSD7AQ9UPZ6 1657 aa23.28■■□□□ 1.32
VCX3A-201ENST00000381089 EN1Q05925 392 aaPredicted RBP23.28■■□□□ 1.32
VCX3A-201ENST00000381089 CDK19Q9BWU1 502 aa23.28■■□□□ 1.32
VCX3A-201ENST00000381089 SPATA31A1Q5TZJ5 1347 aa23.28■■□□□ 1.32
VCX3A-201ENST00000381089 FAM182BQ5T319 152 aa23.27■■□□□ 1.32
VCX3A-201ENST00000381089 STRN4Q9NRL3 753 aa23.27■■□□□ 1.32
VCX3A-201ENST00000381089 CCDC61Q9Y6R9 512 aa23.26■■□□□ 1.31
VCX3A-201ENST00000381089 PHRF1Q9P1Y6 1649 aaKnown RBP23.26■■□□□ 1.31
VCX3A-201ENST00000381089 DISP2A7MBM2 1401 aa23.25■■□□□ 1.31
VCX3A-201ENST00000381089 EVA1CP58658 441 aa23.25■■□□□ 1.31
VCX3A-201ENST00000381089 ZC3H6P61129 1189 aaKnown RBP23.25■■□□□ 1.31
VCX3A-201ENST00000381089 CHRNA2Q15822 529 aa23.25■■□□□ 1.31
VCX3A-201ENST00000381089 FAM196AQ6ZSG2 479 aa23.25■■□□□ 1.31
VCX3A-201ENST00000381089 POLR3AO14802 1390 aaPredicted RBP23.25■■□□□ 1.31
VCX3A-201ENST00000381089 ACEP12821 1306 aa23.24■■□□□ 1.31
VCX3A-201ENST00000381089 NBPF8Q3BBV2 869 aa23.23■■□□□ 1.31
VCX3A-201ENST00000381089 NUTM2GQ5VZR2 741 aa23.23■■□□□ 1.31
VCX3A-201ENST00000381089 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
VCX3A-201ENST00000381089 PLEKHG3A1L390 1219 aa23.21■■□□□ 1.31
VCX3A-201ENST00000381089 ABTB2Q8N961 1025 aa23.21■■□□□ 1.31
VCX3A-201ENST00000381089 USP35Q9P2H5 1018 aa23.21■■□□□ 1.31
VCX3A-201ENST00000381089 TOPAZ1Q8N9V7 1692 aa23.21■■□□□ 1.31
VCX3A-201ENST00000381089 TNS1Q9HBL0 1735 aaKnown RBP23.2■■□□□ 1.3
VCX3A-201ENST00000381089 PDE3BQ13370 1112 aa23.2■■□□□ 1.3
VCX3A-201ENST00000381089 TRIM37O94972 964 aa23.19■■□□□ 1.3
VCX3A-201ENST00000381089 R3HDM1Q15032 1099 aaKnown RBP23.19■■□□□ 1.3
VCX3A-201ENST00000381089 BARGINQ6ZT62 677 aa23.19■■□□□ 1.3
VCX3A-201ENST00000381089 SSH2Q76I76 1423 aa23.18■■□□□ 1.3
VCX3A-201ENST00000381089 PARD3Q8TEW0 1356 aa23.18■■□□□ 1.3
VCX3A-201ENST00000381089 EZH2Q15910 746 aaKnown RBP23.18■■□□□ 1.3
VCX3A-201ENST00000381089 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
VCX3A-201ENST00000381089 CPDO75976 1380 aa23.16■■□□□ 1.3
VCX3A-201ENST00000381089 NRKQ7Z2Y5 1582 aa23.16■■□□□ 1.3
VCX3A-201ENST00000381089 APBA3O96018 575 aa23.16■■□□□ 1.3
VCX3A-201ENST00000381089 NLRP13Q86W25 1043 aa23.16■■□□□ 1.3
VCX3A-201ENST00000381089 TCP11L2Q8N4U5 519 aa23.15■■□□□ 1.3
VCX3A-201ENST00000381089 CAMKK2Q96RR4 588 aa23.15■■□□□ 1.3
VCX3A-201ENST00000381089 THRAP3Q9Y2W1 955 aaKnown RBP23.14■■□□□ 1.29
VCX3A-201ENST00000381089 USP19O94966 1318 aa23.13■■□□□ 1.29
VCX3A-201ENST00000381089 LARP1Q6PKG0 1096 aaKnown RBP23.13■■□□□ 1.29
VCX3A-201ENST00000381089 PPIP5K1Q6PFW1 1433 aa23.13■■□□□ 1.29
VCX3A-201ENST00000381089 BRD4O60885 1362 aaPredicted RBP23.13■■□□□ 1.29
VCX3A-201ENST00000381089 CENPJQ9HC77 1338 aaPredicted RBP23.12■■□□□ 1.29
VCX3A-201ENST00000381089 CAMTA1Q9Y6Y1 1673 aa23.12■■□□□ 1.29
VCX3A-201ENST00000381089 C11orf95C9JLR9 678 aaPredicted RBP23.11■■□□□ 1.29
VCX3A-201ENST00000381089 GCP02774 474 aa23.11■■□□□ 1.29
VCX3A-201ENST00000381089 NBPF1Q3BBV0 1214 aa23.11■■□□□ 1.29
VCX3A-201ENST00000381089 NBPF14Q5TI25 921 aa23.1■■□□□ 1.29
VCX3A-201ENST00000381089 LMO7Q8WWI1 1683 aa23.09■■□□□ 1.29
VCX3A-201ENST00000381089 CABP2Q9NPB3 220 aa23.08■■□□□ 1.29
VCX3A-201ENST00000381089 COL5A2P05997 1499 aaPredicted RBP23.05■■□□□ 1.28
VCX3A-201ENST00000381089 ZBTB7CA1YPR0 619 aa23.05■■□□□ 1.28
VCX3A-201ENST00000381089 RREB1Q92766 1687 aa23.04■■□□□ 1.28
VCX3A-201ENST00000381089 QRICH2Q9H0J4 1663 aa23.04■■□□□ 1.28
VCX3A-201ENST00000381089 NLRP6P59044 892 aa23.04■■□□□ 1.28
VCX3A-201ENST00000381089 CRB1P82279 1406 aa23.04■■□□□ 1.28
VCX3A-201ENST00000381089 PARP4Q9UKK3 1724 aaKnown RBP23.03■■□□□ 1.28
VCX3A-201ENST00000381089 CABP1Q9NZU7 370 aa23.03■■□□□ 1.28
VCX3A-201ENST00000381089 USP6P35125 1406 aa23.02■■□□□ 1.28
VCX3A-201ENST00000381089 AATKQ6ZMQ8 1374 aa23.01■■□□□ 1.27
VCX3A-201ENST00000381089 OVOS2A0A0G2JMS6 1433 aa23■■□□□ 1.27
VCX3A-201ENST00000381089 OVOS2A0A0J9YW53 1432 aa23■■□□□ 1.27
VCX3A-201ENST00000381089 OVOS2Q6IE36 1432 aa23■■□□□ 1.27
VCX3A-201ENST00000381089 NUP188Q5SRE5 1749 aa23■■□□□ 1.27
VCX3A-201ENST00000381089 EVC2Q86UK5 1308 aa23■■□□□ 1.27
VCX3A-201ENST00000381089 TOM1L2Q6ZVM7 507 aa22.99■■□□□ 1.27
VCX3A-201ENST00000381089 SLIT3O75094 1523 aa22.98■■□□□ 1.27
VCX3A-201ENST00000381089 DDB1Q16531 1140 aa22.98■■□□□ 1.27
VCX3A-201ENST00000381089 ZNF692Q9BU19 519 aaPredicted RBP22.95■■□□□ 1.26
VCX3A-201ENST00000381089 CDCA7Q9BWT1 371 aaPredicted RBP22.95■■□□□ 1.26
VCX3A-201ENST00000381089 SPON1Q9HCB6 807 aa22.95■■□□□ 1.26
VCX3A-201ENST00000381089 PPP1R1BQ9UD71 204 aaPredicted RBP22.95■■□□□ 1.26
VCX3A-201ENST00000381089 KCNH5Q8NCM2 988 aa22.94■■□□□ 1.26
VCX3A-201ENST00000381089 WDR17Q8IZU2 1322 aa22.93■■□□□ 1.26
VCX3A-201ENST00000381089 L3MBTL2Q969R5 705 aa22.93■■□□□ 1.26
VCX3A-201ENST00000381089 PIK3C2AO00443 1686 aa22.93■■□□□ 1.26
VCX3A-201ENST00000381089 LRRC37A3O60309 1634 aa22.93■■□□□ 1.26
VCX3A-201ENST00000381089 RGPD3A6NKT7 1758 aaPredicted RBP22.92■■□□□ 1.26
VCX3A-201ENST00000381089 RGPD4Q7Z3J3 1758 aa22.92■■□□□ 1.26
VCX3A-201ENST00000381089 DCAF8L1A6NGE4 600 aa22.92■■□□□ 1.26
VCX3A-201ENST00000381089 PLSCR1O15162 318 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms