RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 BCL2L12Q9HB09 334 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 LMBRD1Q9NUN5 540 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 TTC37Q6PGP7 1564 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 APAF1O14727 1248 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 TESK2Q96S53 571 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 CFAP74Q9C0B2 1584 aa11.82□□□□□ -0.52
SF3A3-201ENST00000373019 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.82□□□□□ -0.52
SF3A3-201ENST00000373019 FAM135AQ9P2D6 1515 aa11.82□□□□□ -0.52
SF3A3-201ENST00000373019 MYO5CQ9NQX4 1742 aa11.82□□□□□ -0.52
SF3A3-201ENST00000373019 GOLGA6L22H0YM25 854 aa11.82□□□□□ -0.52
SF3A3-201ENST00000373019 U2AF2P26368 475 aaKnown RBP eCLIP11.82□□□□□ -0.526e-7■■■□□ 17.1
SF3A3-201ENST00000373019 KIAA2012Q0VF49 1180 aa11.82□□□□□ -0.52
SF3A3-201ENST00000373019 DNTTIP2Q5QJE6 756 aaKnown RBP11.82□□□□□ -0.52
SF3A3-201ENST00000373019 SLC20A2Q08357 652 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 GGT6Q6P531 493 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 GAS2L2Q8NHY3 880 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 ZFP91Q96JP5 570 aaPredicted RBP11.81□□□□□ -0.52
SF3A3-201ENST00000373019 RWDD1Q9H446 243 aaPredicted RBP11.81□□□□□ -0.52
SF3A3-201ENST00000373019 NBPF1Q3BBV0 1214 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 KIF3AQ9Y496 699 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 VGFO15240 615 aaPredicted RBP11.81□□□□□ -0.52
SF3A3-201ENST00000373019 CHRM1P11229 460 aaPredicted RBP11.81□□□□□ -0.52
SF3A3-201ENST00000373019 MAPK8IP2Q13387 824 aaPredicted RBP11.81□□□□□ -0.52
SF3A3-201ENST00000373019 TRPM1Q7Z4N2 1603 aa11.81□□□□□ -0.52
SF3A3-201ENST00000373019 AMER1Q5JTC6 1135 aaPredicted RBP11.8□□□□□ -0.52
SF3A3-201ENST00000373019 MAP3K4Q9Y6R4 1608 aa11.8□□□□□ -0.52
SF3A3-201ENST00000373019 PDCL2Q8N4E4 241 aa11.8□□□□□ -0.52
SF3A3-201ENST00000373019 GPT2Q8TD30 523 aa11.8□□□□□ -0.52
SF3A3-201ENST00000373019 CDK11BP21127 795 aaKnown RBP11.8□□□□□ -0.52
SF3A3-201ENST00000373019 MCTP1Q6DN14 999 aa11.8□□□□□ -0.52
SF3A3-201ENST00000373019 RBM27Q9P2N5 1060 aaKnown RBP11.8□□□□□ -0.52
SF3A3-201ENST00000373019 K7ELQ4 463 aaPredicted RBP11.79□□□□□ -0.52
SF3A3-201ENST00000373019 ANKRD7Q92527 254 aa11.79□□□□□ -0.52
SF3A3-201ENST00000373019 ITSN2Q9NZM3 1697 aa11.79□□□□□ -0.52
SF3A3-201ENST00000373019 ZNF518AQ6AHZ1 1483 aa11.79□□□□□ -0.52
SF3A3-201ENST00000373019 KCNJ4P48050 445 aa11.79□□□□□ -0.52
SF3A3-201ENST00000373019 ZNF771Q7L3S4 317 aaPredicted RBP11.79□□□□□ -0.52
SF3A3-201ENST00000373019 PIBF1Q8WXW3 757 aa11.79□□□□□ -0.52
SF3A3-201ENST00000373019 RBM42Q9BTD8 480 aaKnown RBP11.79□□□□□ -0.52
SF3A3-201ENST00000373019 MAGI2Q86UL8 1455 aa11.78□□□□□ -0.52
SF3A3-201ENST00000373019 RARSP54136 660 aaKnown RBP11.78□□□□□ -0.52
SF3A3-201ENST00000373019 LRSAM1Q6UWE0 723 aa11.78□□□□□ -0.52
SF3A3-201ENST00000373019 SLFN14P0C7P3 912 aa11.78□□□□□ -0.52
SF3A3-201ENST00000373019 NOLC1Q14978 699 aaKnown RBP eCLIP11.78□□□□□ -0.52
SF3A3-201ENST00000373019 ARAP3Q8WWN8 1544 aa11.78□□□□□ -0.52
SF3A3-201ENST00000373019 CYP2E1P05181 493 aaPredicted RBP11.78□□□□□ -0.52
SF3A3-201ENST00000373019 TMEM63CQ9P1W3 806 aa11.77□□□□□ -0.53
SF3A3-201ENST00000373019 TEX2Q8IWB9 1127 aa11.77□□□□□ -0.53
SF3A3-201ENST00000373019 C17orf53Q8N3J3 647 aaPredicted RBP11.76□□□□□ -0.53
SF3A3-201ENST00000373019 KDM5DQ9BY66 1539 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 PKP1Q13835 747 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 CHMP4AQ9BY43 222 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 NSFL1CQ9UNZ2 370 aaKnown RBP11.76□□□□□ -0.53
SF3A3-201ENST00000373019 POGZQ7Z3K3 1410 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 CAPN2P17655 700 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 FKBP5Q13451 457 aaPredicted RBP11.76□□□□□ -0.53
SF3A3-201ENST00000373019 RGS22Q8NE09 1264 aa11.76□□□□□ -0.53
SF3A3-201ENST00000373019 SYCE3A1L190 88 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 FEZ1Q99689 392 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 PRAG1Q86YV5 1406 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 TULP2O00295 520 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 DNAJC2Q99543 621 aaKnown RBP11.75□□□□□ -0.53
SF3A3-201ENST00000373019 SPTLC3Q9NUV7 552 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 PIK3C2GO75747 1445 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 PREX2Q70Z35 1606 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 GPRASP1Q5JY77 1395 aa11.75□□□□□ -0.53
SF3A3-201ENST00000373019 SECISBP2LQ93073 1101 aaKnown RBP11.74□□□□□ -0.53
SF3A3-201ENST00000373019 OGFRQ9NZT2 677 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 WWC1Q8IX03 1113 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 RNF214Q8ND24 703 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 ERBINQ96RT1 1412 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 SYCP2Q9BX26 1530 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 CCDC141Q6ZP82 1450 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 CTIFO43310 598 aaKnown RBP11.74□□□□□ -0.53
SF3A3-201ENST00000373019 CERS3Q8IU89 383 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 MPNDQ8N594 471 aa11.74□□□□□ -0.53
SF3A3-201ENST00000373019 TRAPPC8Q9Y2L5 1435 aa11.73□□□□□ -0.53
SF3A3-201ENST00000373019 PRPF40AO75400 957 aaKnown RBP11.73□□□□□ -0.53
SF3A3-201ENST00000373019 GABPB1Q06547 395 aaPredicted RBP11.73□□□□□ -0.53
SF3A3-201ENST00000373019 PRDM15P57071 1507 aaPredicted RBP11.73□□□□□ -0.53
SF3A3-201ENST00000373019 KIF3BO15066 747 aa11.73□□□□□ -0.53
SF3A3-201ENST00000373019 BCL2L13Q9BXK5 485 aa11.73□□□□□ -0.53
SF3A3-201ENST00000373019 IRX3P78415 501 aaPredicted RBP11.73□□□□□ -0.53
SF3A3-201ENST00000373019 NPC1L1Q9UHC9 1359 aa11.72□□□□□ -0.53
SF3A3-201ENST00000373019 MVPQ14764 893 aaKnown RBP11.72□□□□□ -0.53
SF3A3-201ENST00000373019 KIF16BQ96L93 1317 aa11.72□□□□□ -0.53
SF3A3-201ENST00000373019 RIOK3O14730 519 aaKnown RBP11.72□□□□□ -0.53
SF3A3-201ENST00000373019 PTMAP06454 111 aaKnown RBP11.72□□□□□ -0.53
SF3A3-201ENST00000373019 HDAC1Q13547 482 aaPredicted RBP11.72□□□□□ -0.53
SF3A3-201ENST00000373019 CHAMP1Q96JM3 812 aa11.72□□□□□ -0.53
SF3A3-201ENST00000373019 CEBPAP49715 358 aaPredicted RBP11.71□□□□□ -0.53
SF3A3-201ENST00000373019 TTC12Q9H892 705 aaPredicted RBP11.71□□□□□ -0.53
SF3A3-201ENST00000373019 CTNNA3Q9UI47 895 aa11.71□□□□□ -0.53
SF3A3-201ENST00000373019 CDC42BPAQ5VT25 1732 aa11.71□□□□□ -0.53
SF3A3-201ENST00000373019 ADGBQ8N7X0 1667 aa11.71□□□□□ -0.53
SF3A3-201ENST00000373019 CHGAP10645 457 aaKnown RBP11.71□□□□□ -0.54
SF3A3-201ENST00000373019 LAMC1P11047 1609 aa11.7□□□□□ -0.54
SF3A3-201ENST00000373019 TERF2Q15554 542 aa11.7□□□□□ -0.54
SF3A3-201ENST00000373019 ZDHHC9Q9Y397 364 aa11.7□□□□□ -0.54
SF3A3-201ENST00000373019 TIGD1Q96MW7 591 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms