RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RBM33Q96EV2 1170 aaKnown RBP18.35■□□□□ 0.53
PTPRF-202ENST00000372405 USP6P35125 1406 aa18.35■□□□□ 0.53
PTPRF-202ENST00000372405 FBLN1P23142 703 aa18.34■□□□□ 0.53
PTPRF-202ENST00000372405 SSH2Q76I76 1423 aa18.34■□□□□ 0.53
PTPRF-202ENST00000372405 ANKARQ7Z5J8 1434 aa18.34■□□□□ 0.53
PTPRF-202ENST00000372405 CFAP53Q96M91 514 aa18.33■□□□□ 0.53
PTPRF-202ENST00000372405 FKBP8Q14318 412 aa18.33■□□□□ 0.52
PTPRF-202ENST00000372405 TTC21BQ7Z4L5 1316 aa18.32■□□□□ 0.52
PTPRF-202ENST00000372405 PNPLA6Q8IY17 1366 aa18.32■□□□□ 0.52
PTPRF-202ENST00000372405 ADGRL3Q9HAR2 1447 aa18.32■□□□□ 0.52
PTPRF-202ENST00000372405 PMFBP1Q8TBY8 1022 aa18.31■□□□□ 0.52
PTPRF-202ENST00000372405 CDCA7LQ96GN5 454 aa18.31■□□□□ 0.52
PTPRF-202ENST00000372405 ZNF521Q96K83 1311 aa18.31■□□□□ 0.52
PTPRF-202ENST00000372405 PDE3BQ13370 1112 aa18.31■□□□□ 0.52
PTPRF-202ENST00000372405 POLKQ9UBT6 870 aa18.3■□□□□ 0.52
PTPRF-202ENST00000372405 APAF1O14727 1248 aa18.3■□□□□ 0.52
PTPRF-202ENST00000372405 STRCP1A6NGW2 1772 aa18.29■□□□□ 0.52
PTPRF-202ENST00000372405 HSPA2P54652 639 aa18.29■□□□□ 0.52
PTPRF-202ENST00000372405 OVOS2A0A0J9YW53 1432 aa18.29■□□□□ 0.52
PTPRF-202ENST00000372405 OVOS2Q6IE36 1432 aa18.29■□□□□ 0.52
PTPRF-202ENST00000372405 IQSEC2Q5JU85 1478 aa18.28■□□□□ 0.52
PTPRF-202ENST00000372405 COG3Q96JB2 828 aa18.28■□□□□ 0.52
PTPRF-202ENST00000372405 AATKQ6ZMQ8 1374 aa18.28■□□□□ 0.52
PTPRF-202ENST00000372405 LMTK3Q96Q04 1460 aa18.28■□□□□ 0.52
PTPRF-202ENST00000372405 NEFLP07196 543 aa18.27■□□□□ 0.52
PTPRF-202ENST00000372405 EMILIN1Q9Y6C2 1016 aa18.26■□□□□ 0.51
PTPRF-202ENST00000372405 PIK3C2AO00443 1686 aa18.26■□□□□ 0.51
PTPRF-202ENST00000372405 NGDNQ8NEJ9 315 aaKnown RBP18.25■□□□□ 0.51
PTPRF-202ENST00000372405 U2AF1L5P0DN76 240 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-202ENST00000372405 U2AF1Q01081 240 aaKnown RBP eCLIP18.24■□□□□ 0.51
PTPRF-202ENST00000372405 RUNDC1Q96C34 613 aa18.24■□□□□ 0.51
PTPRF-202ENST00000372405 STRCQ7RTU9 1775 aa18.24■□□□□ 0.51
PTPRF-202ENST00000372405 IRX6P78412 446 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-202ENST00000372405 CDK12Q9NYV4 1490 aaPredicted RBP18.24■□□□□ 0.51
PTPRF-202ENST00000372405 RNF123Q5XPI4 1314 aa18.23■□□□□ 0.51
PTPRF-202ENST00000372405 MARF1Q9Y4F3 1742 aaKnown RBP18.23■□□□□ 0.51
PTPRF-202ENST00000372405 TTC21AQ8NDW8 1320 aa18.23■□□□□ 0.51
PTPRF-202ENST00000372405 DIAPH1O60610 1272 aaKnown RBP18.22■□□□□ 0.51
PTPRF-202ENST00000372405 RRS1Q15050 365 aaKnown RBP18.22■□□□□ 0.51
PTPRF-202ENST00000372405 PPM1GO15355 546 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-202ENST00000372405 USP31Q70CQ4 1352 aa18.22■□□□□ 0.51
PTPRF-202ENST00000372405 U2SURPO15042 1029 aaKnown RBP18.21■□□□□ 0.51
PTPRF-202ENST00000372405 TCP11L2Q8N4U5 519 aa18.21■□□□□ 0.51
PTPRF-202ENST00000372405 PROSER2Q86WR7 435 aaPredicted RBP18.21■□□□□ 0.5
PTPRF-202ENST00000372405 PLEKHF1Q96S99 279 aa18.21■□□□□ 0.5
PTPRF-202ENST00000372405 PEAK1Q9H792 1746 aa18.2■□□□□ 0.5
PTPRF-202ENST00000372405 SPINK5Q9NQ38 1064 aaPredicted RBP18.2■□□□□ 0.5
PTPRF-202ENST00000372405 PHF8Q9UPP1 1060 aa18.2■□□□□ 0.5
PTPRF-202ENST00000372405 DMRT2Q9Y5R5 561 aa18.2■□□□□ 0.5
PTPRF-202ENST00000372405 USP54Q70EL1 1684 aa18.2■□□□□ 0.5
PTPRF-202ENST00000372405 GOLGA2Q08379 1002 aa18.19■□□□□ 0.5
PTPRF-202ENST00000372405 C14orf37Q86TY3 774 aa18.19■□□□□ 0.5
PTPRF-202ENST00000372405 NGEFQ8N5V2 710 aa18.19■□□□□ 0.5
PTPRF-202ENST00000372405 DUSP27Q5VZP5 1158 aa18.19■□□□□ 0.5
PTPRF-202ENST00000372405 PHF23Q9BUL5 403 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-202ENST00000372405 RRP7AQ9Y3A4 280 aaKnown RBP18.19■□□□□ 0.5
PTPRF-202ENST00000372405 LRRC7Q96NW7 1537 aa18.17■□□□□ 0.5
PTPRF-202ENST00000372405 IL13P35225 146 aa18.17■□□□□ 0.5
PTPRF-202ENST00000372405 SLFN5Q08AF3 891 aa18.17■□□□□ 0.5
PTPRF-202ENST00000372405 WWC1Q8IX03 1113 aa18.17■□□□□ 0.5
PTPRF-202ENST00000372405 TRMT2AQ8IZ69 625 aaKnown RBP18.17■□□□□ 0.5
PTPRF-202ENST00000372405 RCAN3Q9UKA8 241 aa18.16■□□□□ 0.5
PTPRF-202ENST00000372405 NEUROD2Q15784 382 aa18.15■□□□□ 0.5
PTPRF-202ENST00000372405 ESCO1Q5FWF5 840 aa18.15■□□□□ 0.5
PTPRF-202ENST00000372405 TMEM94Q12767 1356 aa18.15■□□□□ 0.5
PTPRF-202ENST00000372405 ORAI2Q96SN7 254 aa18.15■□□□□ 0.5
PTPRF-202ENST00000372405 C19orf44Q9H6X5 657 aa18.14■□□□□ 0.49
PTPRF-202ENST00000372405 XIRP1Q702N8 1843 aaKnown RBP18.14■□□□□ 0.49
PTPRF-202ENST00000372405 RSPH6AQ9H0K4 717 aa18.13■□□□□ 0.49
PTPRF-202ENST00000372405 CCDC27Q2M243 656 aa18.13■□□□□ 0.49
PTPRF-202ENST00000372405 C1orf167Q5SNV9 1468 aa18.13■□□□□ 0.49
PTPRF-202ENST00000372405 SOX12O15370 315 aa18.12■□□□□ 0.49
PTPRF-202ENST00000372405 NCBP3Q53F19 620 aaKnown RBP18.12■□□□□ 0.49
PTPRF-202ENST00000372405 FCHSD2O94868 740 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 NLRP6P59044 892 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 NUTM2GQ5VZR2 741 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 MAP3K19Q56UN5 1328 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 E9PSI1 815 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 NCOA3Q9Y6Q9 1424 aa18.11■□□□□ 0.49
PTPRF-202ENST00000372405 RGPD1P0DJD0 1748 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 PAK3O75914 559 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-202ENST00000372405 TMPOP42166 694 aaKnown RBP18.1■□□□□ 0.49
PTPRF-202ENST00000372405 ABTB2Q8N961 1025 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 MST1RQ04912 1400 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 HMOX1P09601 288 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 PRKAR2BP31323 418 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 RRP1P56182 461 aaKnown RBP18.1■□□□□ 0.49
PTPRF-202ENST00000372405 EIF4A2Q14240 407 aaKnown RBP18.1■□□□□ 0.49
PTPRF-202ENST00000372405 ERICH6BQ5W0A0 696 aa18.1■□□□□ 0.49
PTPRF-202ENST00000372405 TRPM3Q9HCF6 1732 aaPredicted RBP18.09■□□□□ 0.49
PTPRF-202ENST00000372405 KIF1AQ12756 1690 aa18.09■□□□□ 0.49
PTPRF-202ENST00000372405 DCCP43146 1447 aa18.09■□□□□ 0.49
PTPRF-202ENST00000372405 HSP90AB2PQ58FF8 381 aa18.09■□□□□ 0.49
PTPRF-202ENST00000372405 MAPK8IP3Q9UPT6 1336 aa18.08■□□□□ 0.49
PTPRF-202ENST00000372405 PSME1Q06323 249 aa18.08■□□□□ 0.49
PTPRF-202ENST00000372405 TRIM35Q9UPQ4 493 aa18.08■□□□□ 0.49
PTPRF-202ENST00000372405 FOXO3O43524 673 aa18.08■□□□□ 0.48
PTPRF-202ENST00000372405 WDR63Q8IWG1 891 aa18.08■□□□□ 0.48
PTPRF-202ENST00000372405 SBNO1A3KN83 1393 aa18.07■□□□□ 0.48
PTPRF-202ENST00000372405 PHACTR3Q96KR7 559 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms