RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 KIF6Q6ZMV9 814 aa23.74■■□□□ 1.39
LMO4-202ENST00000370544 BCAR3O75815 825 aa23.73■■□□□ 1.39
LMO4-202ENST00000370544 PCMTD1Q96MG8 357 aaPredicted RBP23.73■■□□□ 1.39
LMO4-202ENST00000370544 SLC4A2P04920 1241 aa23.73■■□□□ 1.39
LMO4-202ENST00000370544 PNISRQ8TF01 805 aaKnown RBP23.73■■□□□ 1.39
LMO4-202ENST00000370544 FYB1O15117 783 aa23.72■■□□□ 1.39
LMO4-202ENST00000370544 WDR63Q8IWG1 891 aa23.72■■□□□ 1.39
LMO4-202ENST00000370544 SASS6Q6UVJ0 657 aa23.72■■□□□ 1.39
LMO4-202ENST00000370544 CCDC73Q6ZRK6 1079 aa23.72■■□□□ 1.39
LMO4-202ENST00000370544 CCAR2Q8N163 923 aaKnown RBP23.72■■□□□ 1.39
LMO4-202ENST00000370544 RBM42Q9BTD8 480 aaKnown RBP23.72■■□□□ 1.39
LMO4-202ENST00000370544 HDGFL1Q5TGJ6 251 aa23.71■■□□□ 1.39
LMO4-202ENST00000370544 DNAJC2Q99543 621 aaKnown RBP23.71■■□□□ 1.39
LMO4-202ENST00000370544 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.71■■□□□ 1.39
LMO4-202ENST00000370544 ATAD2Q6PL18 1390 aa23.71■■□□□ 1.39
LMO4-202ENST00000370544 IQGAP2Q13576 1575 aa23.71■■□□□ 1.39
LMO4-202ENST00000370544 STRN4Q9NRL3 753 aa23.71■■□□□ 1.39
LMO4-202ENST00000370544 ERC1Q8IUD2 1116 aa23.7■■□□□ 1.39
LMO4-202ENST00000370544 ABCA10Q8WWZ4 1543 aa23.7■■□□□ 1.39
LMO4-202ENST00000370544 CT47B1P0C2W7 299 aaPredicted RBP23.7■■□□□ 1.38
LMO4-202ENST00000370544 AKNAQ7Z591 1439 aa23.69■■□□□ 1.38
LMO4-202ENST00000370544 TBC1D2BQ9UPU7 963 aa23.69■■□□□ 1.38
LMO4-202ENST00000370544 NAIPQ13075 1403 aa23.68■■□□□ 1.38
LMO4-202ENST00000370544 FAM177BA6PVY3 158 aa23.68■■□□□ 1.38
LMO4-202ENST00000370544 CCT4P50991 539 aaKnown RBP23.68■■□□□ 1.38
LMO4-202ENST00000370544 ZNF592Q92610 1267 aa23.68■■□□□ 1.38
LMO4-202ENST00000370544 PCF11O94913 1555 aaKnown RBP23.68■■□□□ 1.38
LMO4-202ENST00000370544 HIP1O00291 1037 aa23.68■■□□□ 1.38
LMO4-202ENST00000370544 IPO7O95373 1038 aaKnown RBP23.68■■□□□ 1.38
LMO4-202ENST00000370544 CCDC141Q6ZP82 1450 aa23.68■■□□□ 1.38
LMO4-202ENST00000370544 ARHGEF11O15085 1522 aa23.67■■□□□ 1.38
LMO4-202ENST00000370544 WDR97A6NE52 1622 aa23.67■■□□□ 1.38
LMO4-202ENST00000370544 ZNF530Q6P9A1 599 aaPredicted RBP23.67■■□□□ 1.38
LMO4-202ENST00000370544 SLC26A8Q96RN1 970 aa23.66■■□□□ 1.38
LMO4-202ENST00000370544 AEBP2Q6ZN18 517 aaPredicted RBP23.66■■□□□ 1.38
LMO4-202ENST00000370544 MAGI1Q96QZ7 1491 aaPredicted RBP23.65■■□□□ 1.38
LMO4-202ENST00000370544 CABP4P57796 275 aa23.65■■□□□ 1.38
LMO4-202ENST00000370544 NFKBIBQ15653 356 aa23.65■■□□□ 1.38
LMO4-202ENST00000370544 BRMS1Q9HCU9 246 aa23.65■■□□□ 1.38
LMO4-202ENST00000370544 CCDC70Q6NSX1 233 aa23.64■■□□□ 1.38
LMO4-202ENST00000370544 ANKLE2Q86XL3 938 aa23.64■■□□□ 1.38
LMO4-202ENST00000370544 RRS1Q15050 365 aaKnown RBP23.63■■□□□ 1.37
LMO4-202ENST00000370544 CAMSAP2Q08AD1 1489 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 ATF7IPQ6VMQ6 1270 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 SPG7Q9UQ90 795 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 POGZQ7Z3K3 1410 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 NEK4P51957 841 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 NSD3Q9BZ95 1437 aa23.63■■□□□ 1.37
LMO4-202ENST00000370544 XBP1P17861 261 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 WWC1Q8IX03 1113 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 RSPH6AQ9H0K4 717 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 SRCIN1Q9C0H9 1055 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 TOM1L2Q6ZVM7 507 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 PRM3Q9NNZ6 103 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 SART3Q15020 963 aaKnown RBP23.62■■□□□ 1.37
LMO4-202ENST00000370544 RABEP1Q15276 862 aa23.62■■□□□ 1.37
LMO4-202ENST00000370544 MVPQ14764 893 aaKnown RBP23.61■■□□□ 1.37
LMO4-202ENST00000370544 CUL7Q14999 1698 aa23.61■■□□□ 1.37
LMO4-202ENST00000370544 LRRCC1Q9C099 1032 aa23.61■■□□□ 1.37
LMO4-202ENST00000370544 MCM2P49736 904 aa23.6■■□□□ 1.37
LMO4-202ENST00000370544 TTC39AQ5SRH9 613 aa23.6■■□□□ 1.37
LMO4-202ENST00000370544 CCDC43Q96MW1 224 aaKnown RBP23.6■■□□□ 1.37
LMO4-202ENST00000370544 HOMER1Q86YM7 354 aa23.6■■□□□ 1.37
LMO4-202ENST00000370544 ANO8Q9HCE9 1232 aaPredicted RBP23.6■■□□□ 1.37
LMO4-202ENST00000370544 CNNM1Q9NRU3 951 aa23.6■■□□□ 1.37
LMO4-202ENST00000370544 FCHSD2O94868 740 aa23.59■■□□□ 1.37
LMO4-202ENST00000370544 CCDC158Q5M9N0 1113 aa23.59■■□□□ 1.37
LMO4-202ENST00000370544 SAMD1Q6SPF0 538 aaPredicted RBP23.59■■□□□ 1.37
LMO4-202ENST00000370544 KLHL34Q8N239 644 aa23.59■■□□□ 1.37
LMO4-202ENST00000370544 PTPN23Q9H3S7 1636 aa23.58■■□□□ 1.37
LMO4-202ENST00000370544 DDX54Q8TDD1 881 aaKnown RBP23.58■■□□□ 1.37
LMO4-202ENST00000370544 CCDC184Q52MB2 194 aa23.58■■□□□ 1.36
LMO4-202ENST00000370544 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.36
LMO4-202ENST00000370544 MTMR7Q9Y216 660 aa23.57■■□□□ 1.36
LMO4-202ENST00000370544 KDM4AO75164 1064 aa23.57■■□□□ 1.36
LMO4-202ENST00000370544 KIF14Q15058 1648 aa23.56■■□□□ 1.36
LMO4-202ENST00000370544 HSP90AA2PQ14568 343 aaPredicted RBP23.56■■□□□ 1.36
LMO4-202ENST00000370544 NUDT16Q96DE0 195 aaKnown RBP23.56■■□□□ 1.36
LMO4-202ENST00000370544 TNNT3P45378 269 aaPredicted RBP23.56■■□□□ 1.36
LMO4-202ENST00000370544 NAT10Q9H0A0 1025 aaKnown RBP23.56■■□□□ 1.36
LMO4-202ENST00000370544 OLFM4Q6UX06 510 aa23.55■■□□□ 1.36
LMO4-202ENST00000370544 SIL1Q9H173 461 aa23.55■■□□□ 1.36
LMO4-202ENST00000370544 MYL6BP14649 208 aa23.55■■□□□ 1.36
LMO4-202ENST00000370544 GPS2Q13227 327 aa23.55■■□□□ 1.36
LMO4-202ENST00000370544 SDF4Q9BRK5 362 aa23.55■■□□□ 1.36
LMO4-202ENST00000370544 PLB1Q6P1J6 1458 aa23.54■■□□□ 1.36
LMO4-202ENST00000370544 ABCC5O15440 1437 aa23.54■■□□□ 1.36
LMO4-202ENST00000370544 NFE2L2Q16236 605 aa23.54■■□□□ 1.36
LMO4-202ENST00000370544 PDCP20941 246 aa23.54■■□□□ 1.36
LMO4-202ENST00000370544 BTBD11A6QL63 1104 aa23.53■■□□□ 1.36
LMO4-202ENST00000370544 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.53■■□□□ 1.36
LMO4-202ENST00000370544 SLC3A2P08195 630 aaKnown RBP23.53■■□□□ 1.36
LMO4-202ENST00000370544 GNL3LQ9NVN8 582 aaKnown RBP23.53■■□□□ 1.36
LMO4-202ENST00000370544 CCDC61Q9Y6R9 512 aa23.53■■□□□ 1.36
LMO4-202ENST00000370544 CHD1LQ86WJ1 897 aa23.52■■□□□ 1.36
LMO4-202ENST00000370544 CD109Q6YHK3 1445 aa23.52■■□□□ 1.36
LMO4-202ENST00000370544 MRE11P49959 708 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 TRAK2O60296 914 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 RRP12Q5JTH9 1297 aaKnown RBP23.51■■□□□ 1.35
LMO4-202ENST00000370544 TMPOP42166 694 aaKnown RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms