RNA–Protein interactions for RNA: ENST00000368213.9

PTPRK-205, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,816 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-205ENST00000368213 BCL11BQ9C0K0 894 aaPredicted RBP13.14□□□□□ -0.31
PTPRK-205ENST00000368213 L1TD1Q5T7N2 865 aaKnown RBP13.14□□□□□ -0.31
PTPRK-205ENST00000368213 MPHOSPH8Q99549 860 aa13.14□□□□□ -0.31
PTPRK-205ENST00000368213 ANO2Q9NQ90 1003 aa13.14□□□□□ -0.31
PTPRK-205ENST00000368213 PRM3Q9NNZ6 103 aa13.14□□□□□ -0.31
PTPRK-205ENST00000368213 MTMR7Q9Y216 660 aa13.13□□□□□ -0.31
PTPRK-205ENST00000368213 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
PTPRK-205ENST00000368213 RNF20Q5VTR2 975 aa13.13□□□□□ -0.31
PTPRK-205ENST00000368213 ZNF652Q9Y2D9 606 aa13.13□□□□□ -0.31
PTPRK-205ENST00000368213 FOXD4L1Q9NU39 408 aa13.13□□□□□ -0.31
PTPRK-205ENST00000368213 PTCD1O75127 700 aaKnown RBP13.12□□□□□ -0.31
PTPRK-205ENST00000368213 GNAI3P08754 354 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 CNKSR2Q8WXI2 1034 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 C8orf37Q96NL8 207 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 MPRIPQ6WCQ1 1025 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 ZNF428Q96B54 188 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 SLC4A3P48751 1232 aa13.12□□□□□ -0.31
PTPRK-205ENST00000368213 TWISTNBQ3B726 338 aaPredicted RBP13.12□□□□□ -0.31
PTPRK-205ENST00000368213 DHX29Q7Z478 1369 aaKnown RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 NOP58Q9Y2X3 529 aaKnown RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 RALYLQ86SE5 291 aaKnown RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 MCTP1Q6DN14 999 aa13.11□□□□□ -0.31
PTPRK-205ENST00000368213 UNC13AQ9UPW8 1703 aa13.11□□□□□ -0.31
PTPRK-205ENST00000368213 SYAP1Q96A49 352 aaPredicted RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 SLKQ9H2G2 1235 aaPredicted RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 PCF11O94913 1555 aaKnown RBP13.11□□□□□ -0.31
PTPRK-205ENST00000368213 WASLO00401 505 aaPredicted RBP13.1□□□□□ -0.31
PTPRK-205ENST00000368213 TTC39AQ5SRH9 613 aa13.1□□□□□ -0.31
PTPRK-205ENST00000368213 ADAMTS8Q9UP79 889 aa13.1□□□□□ -0.31
PTPRK-205ENST00000368213 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
PTPRK-205ENST00000368213 CRBNQ96SW2 442 aa13.1□□□□□ -0.31
PTPRK-205ENST00000368213 DNAJC2Q99543 621 aaKnown RBP13.09□□□□□ -0.31
PTPRK-205ENST00000368213 SURF6O75683 361 aaKnown RBP13.09□□□□□ -0.31
PTPRK-205ENST00000368213 SLC3A2P08195 630 aaKnown RBP13.09□□□□□ -0.31
PTPRK-205ENST00000368213 CCDC57Q2TAC2 916 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 CCDC158Q5M9N0 1113 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 CLASRPQ8N2M8 674 aaKnown RBP13.09□□□□□ -0.31
PTPRK-205ENST00000368213 WDR7Q9Y4E6 1490 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 SLC4A2P04920 1241 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 PTMSP20962 102 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 REC8O95072 547 aa13.09□□□□□ -0.31
PTPRK-205ENST00000368213 CENPQQ7L2Z9 268 aaPredicted RBP13.09□□□□□ -0.31
PTPRK-205ENST00000368213 RRP1P56182 461 aaKnown RBP13.08□□□□□ -0.31
PTPRK-205ENST00000368213 USHBP1Q8N6Y0 703 aa13.08□□□□□ -0.31
PTPRK-205ENST00000368213 AK7Q96M32 723 aa13.08□□□□□ -0.31
PTPRK-205ENST00000368213 GNAT3A8MTJ3 354 aa13.08□□□□□ -0.32
PTPRK-205ENST00000368213 NCKAP5LQ9HCH0 1330 aa13.08□□□□□ -0.32
PTPRK-205ENST00000368213 FOXD4L5Q5VV16 416 aaPredicted RBP13.08□□□□□ -0.32
PTPRK-205ENST00000368213 FOXD4L4Q8WXT5 416 aaPredicted RBP13.08□□□□□ -0.32
PTPRK-205ENST00000368213 PAXIP1Q6ZW49 1069 aaPredicted RBP13.08□□□□□ -0.32
PTPRK-205ENST00000368213 KRI1Q8N9T8 703 aaKnown RBP13.08□□□□□ -0.32
PTPRK-205ENST00000368213 PEG3Q9GZU2 1588 aa13.08□□□□□ -0.32
PTPRK-205ENST00000368213 PDE4CQ08493 712 aa13.08□□□□□ -0.32
PTPRK-205ENST00000368213 PES1O00541 588 aaKnown RBP13.07□□□□□ -0.32
PTPRK-205ENST00000368213 CEP89Q96ST8 783 aa13.07□□□□□ -0.32
PTPRK-205ENST00000368213 FSD1Q9BTV5 496 aa13.07□□□□□ -0.32
PTPRK-205ENST00000368213 ANO8Q9HCE9 1232 aaPredicted RBP13.07□□□□□ -0.32
PTPRK-205ENST00000368213 ATP2B2Q01814 1243 aa13.07□□□□□ -0.32
PTPRK-205ENST00000368213 TPD52L1Q16890 204 aaPredicted RBP13.07□□□□□ -0.32
PTPRK-205ENST00000368213 IGHMBP2P38935 993 aaKnown RBP13.07□□□□□ -0.32
PTPRK-205ENST00000368213 NPHP3Q7Z494 1330 aa13.07□□□□□ -0.32
PTPRK-205ENST00000368213 EXOSC9Q06265 439 aaKnown RBP13.06□□□□□ -0.32
PTPRK-205ENST00000368213 AMOTQ4VCS5 1084 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 ZSCAN29Q8IWY8 852 aaPredicted RBP13.06□□□□□ -0.32
PTPRK-205ENST00000368213 ZBED9Q6R2W3 1325 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 UHRF1BP1LA0JNW5 1464 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 NME9Q86XW9 330 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 ABCC5O15440 1437 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 CHRNA2Q15822 529 aa13.06□□□□□ -0.32
PTPRK-205ENST00000368213 NBPF8Q3BBV2 869 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 ERC1Q8IUD2 1116 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 ADGRF5Q8IZF2 1346 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 SRCIN1Q9C0H9 1055 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 TMOD2Q9NZR1 351 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 NSD3Q9BZ95 1437 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
PTPRK-205ENST00000368213 PLCH2O75038 1416 aa13.05□□□□□ -0.32
PTPRK-205ENST00000368213 SART3Q15020 963 aaKnown RBP13.04□□□□□ -0.32
PTPRK-205ENST00000368213 CCDC47Q96A33 483 aaKnown RBP13.04□□□□□ -0.32
PTPRK-205ENST00000368213 NINLQ9Y2I6 1382 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 EXOC6Q8TAG9 804 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 SIL1Q9H173 461 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 BRD4O60885 1362 aaPredicted RBP13.04□□□□□ -0.32
PTPRK-205ENST00000368213 NOS1P29475 1434 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 PHF14O94880 888 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 ZNF518AQ6AHZ1 1483 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 KDM5BQ9UGL1 1544 aa13.04□□□□□ -0.32
PTPRK-205ENST00000368213 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.04□□□□□ -0.32
PTPRK-205ENST00000368213 FAM161AQ3B820 660 aa13.03□□□□□ -0.32
PTPRK-205ENST00000368213 WDHD1O75717 1129 aaPredicted RBP13.03□□□□□ -0.32
PTPRK-205ENST00000368213 GNAI2P04899 355 aa13.03□□□□□ -0.32
PTPRK-205ENST00000368213 SAFBQ15424 915 aaKnown RBP eCLIP13.03□□□□□ -0.32
PTPRK-205ENST00000368213 CNTROBQ8N137 903 aa13.03□□□□□ -0.32
PTPRK-205ENST00000368213 RPGRQ92834 1020 aaKnown RBP13.03□□□□□ -0.32
PTPRK-205ENST00000368213 CCDC85AQ96PX6 553 aaPredicted RBP13.03□□□□□ -0.32
PTPRK-205ENST00000368213 TSR2Q969E8 191 aaKnown RBP13.03□□□□□ -0.32
PTPRK-205ENST00000368213 PTPN23Q9H3S7 1636 aa13.02□□□□□ -0.32
PTPRK-205ENST00000368213 RRP12Q5JTH9 1297 aaKnown RBP13.02□□□□□ -0.32
PTPRK-205ENST00000368213 LNPKQ9C0E8 428 aa13.02□□□□□ -0.32
PTPRK-205ENST00000368213 FCHSD2O94868 740 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms