RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 GOPCQ9HD26 462 aa9.6□□□□□ -0.87
RNU4-4P-201ENST00000364588 CD2BP2O95400 341 aaKnown RBP9.59□□□□□ -0.87
RNU4-4P-201ENST00000364588 QPCTQ16769 361 aa9.59□□□□□ -0.87
RNU4-4P-201ENST00000364588 CCDC88BA6NC98 1476 aa9.59□□□□□ -0.87
RNU4-4P-201ENST00000364588 CFAP99D6REC4 459 aa9.58□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRKCSHP14314 528 aaPredicted RBP9.58□□□□□ -0.88
RNU4-4P-201ENST00000364588 TRIM32Q13049 653 aa9.58□□□□□ -0.88
RNU4-4P-201ENST00000364588 ATP1B4Q9UN42 357 aaPredicted RBP9.58□□□□□ -0.88
RNU4-4P-201ENST00000364588 TSC1Q92574 1164 aa9.56□□□□□ -0.88
RNU4-4P-201ENST00000364588 PCMTD1Q96MG8 357 aaPredicted RBP9.56□□□□□ -0.88
RNU4-4P-201ENST00000364588 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.56□□□□□ -0.88
RNU4-4P-201ENST00000364588 LYPD8Q6UX82 237 aa9.55□□□□□ -0.88
RNU4-4P-201ENST00000364588 NRG2O14511 850 aaPredicted RBP9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRR20EP86478 221 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRR20CP86479 221 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRR20DP86480 221 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRR20BP86481 221 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PRR20AP86496 221 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 IL27Q8NEV9 243 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 PDZRN3Q9UPQ7 1066 aa9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 ZNF608Q9ULD9 1512 aaPredicted RBP9.54□□□□□ -0.88
RNU4-4P-201ENST00000364588 WNT7BP56706 349 aa9.53□□□□□ -0.88
RNU4-4P-201ENST00000364588 PPP2R2DQ66LE6 453 aa9.53□□□□□ -0.88
RNU4-4P-201ENST00000364588 EVA1BQ9NVM1 165 aa9.53□□□□□ -0.88
RNU4-4P-201ENST00000364588 TOPBP1Q92547 1522 aa9.52□□□□□ -0.88
RNU4-4P-201ENST00000364588 GFRA3O60609 400 aa9.52□□□□□ -0.89
RNU4-4P-201ENST00000364588 KCNH2Q12809 1159 aa9.52□□□□□ -0.89
RNU4-4P-201ENST00000364588 RTL5Q5HYW3 569 aaPredicted RBP9.52□□□□□ -0.89
RNU4-4P-201ENST00000364588 IFT140Q96RY7 1462 aa9.52□□□□□ -0.89
RNU4-4P-201ENST00000364588 CTHP32929 405 aa9.51□□□□□ -0.89
RNU4-4P-201ENST00000364588 PROCA1Q8NCQ7 364 aaPredicted RBP9.51□□□□□ -0.89
RNU4-4P-201ENST00000364588 UNC93B1Q9H1C4 597 aa9.51□□□□□ -0.89
RNU4-4P-201ENST00000364588 F12P00748 615 aaPredicted RBP9.5□□□□□ -0.89
RNU4-4P-201ENST00000364588 WNT7AO00755 349 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 GDF9O60383 454 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 TRIM67Q6ZTA4 783 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 EIF4G3O43432 1585 aaKnown RBP9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 RIMBP3CA6NJZ7 1639 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 RIMBP3BA6NNM3 1639 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 RIMBP3Q9UFD9 1639 aa9.49□□□□□ -0.89
RNU4-4P-201ENST00000364588 TNFRSF10AO00220 468 aa9.48□□□□□ -0.89
RNU4-4P-201ENST00000364588 FOXC1Q12948 553 aa9.48□□□□□ -0.89
RNU4-4P-201ENST00000364588 DNMBPQ6XZF7 1577 aa9.48□□□□□ -0.89
RNU4-4P-201ENST00000364588 ABCC8Q09428 1581 aa9.47□□□□□ -0.89
RNU4-4P-201ENST00000364588 PER1O15534 1290 aaPredicted RBP9.47□□□□□ -0.89
RNU4-4P-201ENST00000364588 PTCRAQ6ISU1 281 aaPredicted RBP9.47□□□□□ -0.89
RNU4-4P-201ENST00000364588 PKD2L1Q9P0L9 805 aa9.47□□□□□ -0.89
RNU4-4P-201ENST00000364588 MAP10Q9P2G4 905 aa9.47□□□□□ -0.89
RNU4-4P-201ENST00000364588 Q6ZNB5 142 aa9.46□□□□□ -0.9
RNU4-4P-201ENST00000364588 ARMC2Q8NEN0 867 aa9.46□□□□□ -0.9
RNU4-4P-201ENST00000364588 RFC5P40937 340 aa9.45□□□□□ -0.9
RNU4-4P-201ENST00000364588 NBPF14Q5TI25 921 aa9.45□□□□□ -0.9
RNU4-4P-201ENST00000364588 AQRO60306 1485 aaKnown RBP eCLIP9.45□□□□□ -0.9
RNU4-4P-201ENST00000364588 TARBP1Q13395 1621 aaKnown RBP9.45□□□□□ -0.9
RNU4-4P-201ENST00000364588 CHD1O14646 1710 aa9.45□□□□□ -0.9
RNU4-4P-201ENST00000364588 AP1G2O75843 785 aa9.44□□□□□ -0.9
RNU4-4P-201ENST00000364588 CYP4X1Q8N118 509 aa9.44□□□□□ -0.9
RNU4-4P-201ENST00000364588 ZNF511Q8NB15 262 aa9.44□□□□□ -0.9
RNU4-4P-201ENST00000364588 ARHGEF11O15085 1522 aa9.44□□□□□ -0.9
RNU4-4P-201ENST00000364588 USP17L8P0C7I0 530 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 SKOR1P84550 965 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 CTDSPL2Q05D32 466 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 TMEM259Q4ZIN3 620 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 RC3H1Q5TC82 1133 aaKnown RBP9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 EHBP1Q8NDI1 1231 aa9.43□□□□□ -0.9
RNU4-4P-201ENST00000364588 POLA1P09884 1462 aaPredicted RBP9.42□□□□□ -0.9
RNU4-4P-201ENST00000364588 SH3BP2P78314 561 aa9.42□□□□□ -0.9
RNU4-4P-201ENST00000364588 PKDCCQ504Y2 493 aa9.42□□□□□ -0.9
RNU4-4P-201ENST00000364588 PNMA1Q8ND90 353 aa9.42□□□□□ -0.9
RNU4-4P-201ENST00000364588 MRGPRX2Q96LB1 330 aa9.42□□□□□ -0.9
RNU4-4P-201ENST00000364588 FAM187AA6NFU0 413 aa9.41□□□□□ -0.9
RNU4-4P-201ENST00000364588 FBXO31Q5XUX0 539 aaPredicted RBP9.41□□□□□ -0.9
RNU4-4P-201ENST00000364588 BAP1Q92560 729 aa9.41□□□□□ -0.9
RNU4-4P-201ENST00000364588 GPKOWQ92917 476 aaPredicted RBP eCLIP9.41□□□□□ -0.9
RNU4-4P-201ENST00000364588 TOR4AQ9NXH8 423 aa9.41□□□□□ -0.9
RNU4-4P-201ENST00000364588 RAD54L2Q9Y4B4 1467 aa9.4□□□□□ -0.9
RNU4-4P-201ENST00000364588 ZC3H4Q9UPT8 1303 aaKnown RBP9.4□□□□□ -0.9
RNU4-4P-201ENST00000364588 TTC24A2A3L6 582 aaPredicted RBP9.4□□□□□ -0.9
RNU4-4P-201ENST00000364588 DGAT1O75907 488 aa9.4□□□□□ -0.9
RNU4-4P-201ENST00000364588 SNIP1Q8TAD8 396 aaKnown RBP9.4□□□□□ -0.9
RNU4-4P-201ENST00000364588 CYB5RLQ6IPT4 315 aa9.39□□□□□ -0.91
RNU4-4P-201ENST00000364588 LRRN4Q8WUT4 740 aa9.39□□□□□ -0.91
RNU4-4P-201ENST00000364588 TDRD9Q8NDG6 1382 aaKnown RBP9.38□□□□□ -0.91
RNU4-4P-201ENST00000364588 VARSP26640 1264 aaKnown RBP9.38□□□□□ -0.91
RNU4-4P-201ENST00000364588 BPHLQ86WA6 291 aaPredicted RBP9.38□□□□□ -0.91
RNU4-4P-201ENST00000364588 SOGA1O94964 1423 aa9.38□□□□□ -0.91
RNU4-4P-201ENST00000364588 FGD5Q6ZNL6 1462 aa9.37□□□□□ -0.91
RNU4-4P-201ENST00000364588 AGERQ15109 404 aa9.37□□□□□ -0.91
RNU4-4P-201ENST00000364588 APBB1O00213 710 aa9.36□□□□□ -0.91
RNU4-4P-201ENST00000364588 SOCS7O14512 581 aa9.36□□□□□ -0.91
RNU4-4P-201ENST00000364588 FAM174AQ8TBP5 190 aa9.36□□□□□ -0.91
RNU4-4P-201ENST00000364588 FKBPLQ9UIM3 349 aa9.36□□□□□ -0.91
RNU4-4P-201ENST00000364588 CUX1P39880 1505 aa9.36□□□□□ -0.91
RNU4-4P-201ENST00000364588 BANK1Q8NDB2 785 aa9.35□□□□□ -0.91
RNU4-4P-201ENST00000364588 SNAPC4Q5SXM2 1469 aa9.34□□□□□ -0.91
RNU4-4P-201ENST00000364588 ARAP1Q96P48 1450 aa9.34□□□□□ -0.91
RNU4-4P-201ENST00000364588 NR6A1Q15406 480 aa9.34□□□□□ -0.91
RNU4-4P-201ENST00000364588 TRAF7Q6Q0C0 670 aa9.34□□□□□ -0.91
RNU4-4P-201ENST00000364588 ALDH1A1P00352 501 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms