RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 GCC1Q96CN9 775 aa23.48■■□□□ 1.35
CCDC88B-202ENST00000356786 PODXL2Q9NZ53 605 aa23.47■■□□□ 1.35
CCDC88B-202ENST00000356786 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.47■■□□□ 1.355e-7■■■■■ 105.2
CCDC88B-202ENST00000356786 SUPT6HQ7KZ85 1726 aaKnown RBP23.46■■□□□ 1.35
CCDC88B-202ENST00000356786 RUFY1Q96T51 708 aa23.46■■□□□ 1.35
CCDC88B-202ENST00000356786 CCDC112Q8NEF3 446 aa23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 FMNL2Q96PY5 1086 aa23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 C9orf84Q5VXU9 1444 aa23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 PDILTQ8N807 584 aa23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 TSR2Q969E8 191 aaKnown RBP23.45■■□□□ 1.34
CCDC88B-202ENST00000356786 TRDNQ13061 729 aa23.44■■□□□ 1.34
CCDC88B-202ENST00000356786 APPP05067 770 aa23.44■■□□□ 1.34
CCDC88B-202ENST00000356786 FAM69CQ0P6D2 419 aa23.44■■□□□ 1.34
CCDC88B-202ENST00000356786 NBPF1Q3BBV0 1214 aa23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 AK7Q96M32 723 aa23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 KINO60870 393 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 PDCP20941 246 aa23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 NOB1Q9ULX3 412 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 STAC3Q96MF2 364 aa23.43■■□□□ 1.34
CCDC88B-202ENST00000356786 DAPK1P53355 1430 aa23.42■■□□□ 1.34
CCDC88B-202ENST00000356786 C1orf141Q5JVX7 400 aa23.42■■□□□ 1.34
CCDC88B-202ENST00000356786 CCDC192P0DO97 292 aa23.41■■□□□ 1.34
CCDC88B-202ENST00000356786 UBTFL1P0CB47 393 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-202ENST00000356786 SMC2O95347 1197 aa23.41■■□□□ 1.34
CCDC88B-202ENST00000356786 MVPQ14764 893 aaKnown RBP23.41■■□□□ 1.34
CCDC88B-202ENST00000356786 PSMA5P28066 241 aa23.4■■□□□ 1.34
CCDC88B-202ENST00000356786 EID1Q9Y6B2 187 aa23.4■■□□□ 1.34
CCDC88B-202ENST00000356786 ZNF608Q9ULD9 1512 aaPredicted RBP23.4■■□□□ 1.34
CCDC88B-202ENST00000356786 GRIN2AQ12879 1464 aa23.4■■□□□ 1.34
CCDC88B-202ENST00000356786 H0YHG0 523 aa23.39■■□□□ 1.34
CCDC88B-202ENST00000356786 OLFM4Q6UX06 510 aa23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 CNTROBQ8N137 903 aa23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 SURF6O75683 361 aaKnown RBP23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 WDR33Q9C0J8 1336 aaKnown RBP23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 MAP3K1Q13233 1512 aa23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 NAIPQ13075 1403 aa23.39■■□□□ 1.33
CCDC88B-202ENST00000356786 ATF7IPQ6VMQ6 1270 aa23.38■■□□□ 1.33
CCDC88B-202ENST00000356786 CCDC47Q96A33 483 aaKnown RBP23.38■■□□□ 1.33
CCDC88B-202ENST00000356786 NINLQ9Y2I6 1382 aa23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 NFXL1Q6ZNB6 911 aa23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 CHD1LQ86WJ1 897 aa23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 CLASRPQ8N2M8 674 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 DDX58O95786 925 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 GNAI3P08754 354 aa23.37■■□□□ 1.33
CCDC88B-202ENST00000356786 SAFBQ15424 915 aaKnown RBP eCLIP23.36■■□□□ 1.33
CCDC88B-202ENST00000356786 VPS53Q5VIR6 699 aa23.36■■□□□ 1.33
CCDC88B-202ENST00000356786 PLB1Q6P1J6 1458 aa23.36■■□□□ 1.33
CCDC88B-202ENST00000356786 C20orf194Q5TEA3 1177 aa23.36■■□□□ 1.33
CCDC88B-202ENST00000356786 TTLL5Q6EMB2 1281 aa23.36■■□□□ 1.33
CCDC88B-202ENST00000356786 TWISTNBQ3B726 338 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-202ENST00000356786 RALYLQ86SE5 291 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-202ENST00000356786 ERCC4Q92889 916 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-202ENST00000356786 KIAA1107Q9UPP5 1409 aa23.35■■□□□ 1.33
CCDC88B-202ENST00000356786 MAGI1Q96QZ7 1491 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-202ENST00000356786 LEKR1Q6ZMV7 388 aa23.34■■□□□ 1.33
CCDC88B-202ENST00000356786 PDCL2Q8N4E4 241 aa23.34■■□□□ 1.33
CCDC88B-202ENST00000356786 CABP2Q9NPB3 220 aa23.34■■□□□ 1.33
CCDC88B-202ENST00000356786 PRKAR2BP31323 418 aa23.34■■□□□ 1.33
CCDC88B-202ENST00000356786 SYCE3A1L190 88 aa23.34■■□□□ 1.33
CCDC88B-202ENST00000356786 CEBPZQ03701 1054 aaKnown RBP23.33■■□□□ 1.33
CCDC88B-202ENST00000356786 FSD1Q9BTV5 496 aa23.33■■□□□ 1.33
CCDC88B-202ENST00000356786 NAP1L1P55209 391 aaKnown RBP23.33■■□□□ 1.32
CCDC88B-202ENST00000356786 TNMDQ9H2S6 317 aa23.33■■□□□ 1.32
CCDC88B-202ENST00000356786 CDR1P51861 262 aa23.33■■□□□ 1.32
CCDC88B-202ENST00000356786 PDCL3Q9H2J4 239 aa23.33■■□□□ 1.32
CCDC88B-202ENST00000356786 WDR63Q8IWG1 891 aa23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 CCP110O43303 1012 aa23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 CFAP70Q5T0N1 1121 aa23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 TMEM132EQ6IEE7 984 aa23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 PRDM10Q9NQV6 1147 aa23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 GTF2E1P29083 439 aaPredicted RBP23.32■■□□□ 1.32
CCDC88B-202ENST00000356786 SLFN5Q08AF3 891 aa23.31■■□□□ 1.32
CCDC88B-202ENST00000356786 TBC1D2Q9BYX2 928 aa23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 PLEKHH2Q8IVE3 1493 aa23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 KRT85P78386 507 aa23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 UBE2Q2Q8WVN8 375 aa23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 XPCQ01831 940 aaPredicted RBP23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 CAGE1Q8TC20 777 aa23.3■■□□□ 1.32
CCDC88B-202ENST00000356786 NEUROD6Q96NK8 337 aa23.29■■□□□ 1.32
CCDC88B-202ENST00000356786 CT47B1P0C2W7 299 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-202ENST00000356786 TTC5Q8N0Z6 440 aa23.29■■□□□ 1.32
CCDC88B-202ENST00000356786 SKIDA1Q1XH10 827 aa23.28■■□□□ 1.32
CCDC88B-202ENST00000356786 ARHGEF11O15085 1522 aa23.27■■□□□ 1.32
CCDC88B-202ENST00000356786 C11orf95C9JLR9 678 aaPredicted RBP23.27■■□□□ 1.32
CCDC88B-202ENST00000356786 CBX1P83916 185 aa23.27■■□□□ 1.32
CCDC88B-202ENST00000356786 WASHC4Q2M389 1173 aa23.27■■□□□ 1.32
CCDC88B-202ENST00000356786 FILIP1Q7Z7B0 1213 aa23.27■■□□□ 1.32
CCDC88B-202ENST00000356786 SCAPERQ9BY12 1400 aa23.27■■□□□ 1.31
CCDC88B-202ENST00000356786 AXDND1Q5T1B0 1012 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 SLC12A5Q9H2X9 1139 aa23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 CYP46A1Q9Y6A2 500 aa23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 GNAI2P04899 355 aa23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 STK38Q15208 465 aa23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 RDXP35241 583 aaKnown RBP23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 AEBP1Q8IUX7 1158 aa23.26■■□□□ 1.31
CCDC88B-202ENST00000356786 ERICH2A1L162 156 aa23.25■■□□□ 1.31
CCDC88B-202ENST00000356786 ERICH4A6NGS2 130 aa23.25■■□□□ 1.31
CCDC88B-202ENST00000356786 LARP1BQ659C4 914 aaKnown RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms