RNA–Protein interactions for RNA: ENST00000354291.8

DDX55-202, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 1,004 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-202ENST00000354291 GPRASP1Q5JY77 1395 aa23.71■■□□□ 1.39
DDX55-202ENST00000354291 PAK3O75914 559 aaPredicted RBP23.71■■□□□ 1.39
DDX55-202ENST00000354291 CFAP70Q5T0N1 1121 aa23.71■■□□□ 1.39
DDX55-202ENST00000354291 STRN4Q9NRL3 753 aa23.71■■□□□ 1.39
DDX55-202ENST00000354291 NRAPQ86VF7 1730 aa23.7■■□□□ 1.39
DDX55-202ENST00000354291 SPATA31E1Q6ZUB1 1445 aa23.7■■□□□ 1.38
DDX55-202ENST00000354291 IFT172Q9UG01 1749 aa23.68■■□□□ 1.38
DDX55-202ENST00000354291 SPATA31A1Q5TZJ5 1347 aa23.68■■□□□ 1.38
DDX55-202ENST00000354291 HIRIP3Q9BW71 556 aaPredicted RBP23.68■■□□□ 1.38
DDX55-202ENST00000354291 USP35Q9P2H5 1018 aa23.68■■□□□ 1.38
DDX55-202ENST00000354291 COL14A1Q05707 1796 aaKnown RBP23.68■■□□□ 1.38
DDX55-202ENST00000354291 PDE3BQ13370 1112 aa23.67■■□□□ 1.38
DDX55-202ENST00000354291 CHRNA2Q15822 529 aa23.67■■□□□ 1.38
DDX55-202ENST00000354291 SPON1Q9HCB6 807 aa23.67■■□□□ 1.38
DDX55-202ENST00000354291 PARD3Q8TEW0 1356 aa23.66■■□□□ 1.38
DDX55-202ENST00000354291 ACIN1Q9UKV3 1341 aaKnown RBP23.66■■□□□ 1.38
DDX55-202ENST00000354291 TNS1Q9HBL0 1735 aaKnown RBP23.66■■□□□ 1.38
DDX55-202ENST00000354291 NGDNQ8NEJ9 315 aaKnown RBP23.65■■□□□ 1.38
DDX55-202ENST00000354291 KCNQ2O43526 872 aa23.64■■□□□ 1.37
DDX55-202ENST00000354291 ANKARQ7Z5J8 1434 aa23.64■■□□□ 1.37
DDX55-202ENST00000354291 EVA1CP58658 441 aa23.63■■□□□ 1.37
DDX55-202ENST00000354291 THSD7AQ9UPZ6 1657 aa23.63■■□□□ 1.37
DDX55-202ENST00000354291 ADGRB2O60241 1585 aa23.62■■□□□ 1.37
DDX55-202ENST00000354291 MPHOSPH9Q99550 1183 aa23.62■■□□□ 1.37
DDX55-202ENST00000354291 ZC3H6P61129 1189 aaKnown RBP23.61■■□□□ 1.37
DDX55-202ENST00000354291 KIAA0232Q92628 1395 aa23.61■■□□□ 1.37
DDX55-202ENST00000354291 MINK1Q8N4C8 1332 aaPredicted RBP23.6■■□□□ 1.37
DDX55-202ENST00000354291 PRR36Q9H6K5 1346 aa23.59■■□□□ 1.37
DDX55-202ENST00000354291 TRAK1Q9UPV9 953 aa23.59■■□□□ 1.37
DDX55-202ENST00000354291 TRPM3Q9HCF6 1732 aaPredicted RBP23.57■■□□□ 1.36
DDX55-202ENST00000354291 NUTM2GQ5VZR2 741 aa23.57■■□□□ 1.36
DDX55-202ENST00000354291 NINLQ9Y2I6 1382 aa23.55■■□□□ 1.36
DDX55-202ENST00000354291 ALS2Q96Q42 1657 aa23.55■■□□□ 1.36
DDX55-202ENST00000354291 WASLO00401 505 aaPredicted RBP23.55■■□□□ 1.36
DDX55-202ENST00000354291 BARGINQ6ZT62 677 aa23.55■■□□□ 1.36
DDX55-202ENST00000354291 EIF3AQ14152 1382 aaKnown RBP23.52■■□□□ 1.36
DDX55-202ENST00000354291 LARP1Q6PKG0 1096 aaKnown RBP23.52■■□□□ 1.36
DDX55-202ENST00000354291 TCP11L2Q8N4U5 519 aa23.51■■□□□ 1.35
DDX55-202ENST00000354291 ZNF784Q8NCA9 323 aaPredicted RBP23.5■■□□□ 1.35
DDX55-202ENST00000354291 RREB1Q92766 1687 aa23.48■■□□□ 1.35
DDX55-202ENST00000354291 NUP188Q5SRE5 1749 aa23.48■■□□□ 1.35
DDX55-202ENST00000354291 SSH2Q76I76 1423 aa23.48■■□□□ 1.35
DDX55-202ENST00000354291 DLC1Q96QB1 1528 aa23.48■■□□□ 1.35
DDX55-202ENST00000354291 UTRNP46939 3433 aa23.46■■□□□ 1.35
DDX55-202ENST00000354291 SENP3-EIF4A1A0A087X0R7 540 aa23.46■■□□□ 1.35
DDX55-202ENST00000354291 NUDT16Q96DE0 195 aaKnown RBP23.46■■□□□ 1.35
DDX55-202ENST00000354291 TULP4Q9NRJ4 1543 aa23.45■■□□□ 1.34
DDX55-202ENST00000354291 ZBTB7AO95365 584 aa23.44■■□□□ 1.34
DDX55-202ENST00000354291 PDGFDQ9GZP0 370 aaPredicted RBP23.44■■□□□ 1.34
DDX55-202ENST00000354291 CRYBG1Q9Y4K1 1723 aa23.44■■□□□ 1.34
DDX55-202ENST00000354291 ANO8Q9HCE9 1232 aaPredicted RBP23.43■■□□□ 1.34
DDX55-202ENST00000354291 KDM2AQ9Y2K7 1162 aa23.43■■□□□ 1.34
DDX55-202ENST00000354291 THRAP3Q9Y2W1 955 aaKnown RBP23.43■■□□□ 1.34
DDX55-202ENST00000354291 CAMTA1Q9Y6Y1 1673 aa23.42■■□□□ 1.34
DDX55-202ENST00000354291 BCL11BQ9C0K0 894 aaPredicted RBP23.42■■□□□ 1.34
DDX55-202ENST00000354291 ATF5Q9Y2D1 282 aaPredicted RBP23.42■■□□□ 1.34
DDX55-202ENST00000354291 C11orf95C9JLR9 678 aaPredicted RBP23.41■■□□□ 1.34
DDX55-202ENST00000354291 PLSCR1O15162 318 aa23.41■■□□□ 1.34
DDX55-202ENST00000354291 ABTB2Q8N961 1025 aa23.41■■□□□ 1.34
DDX55-202ENST00000354291 ACEP12821 1306 aa23.37■■□□□ 1.33
DDX55-202ENST00000354291 ZBTB7CA1YPR0 619 aa23.37■■□□□ 1.33
DDX55-202ENST00000354291 PTF1AQ7RTS3 328 aa23.37■■□□□ 1.33
DDX55-202ENST00000354291 CDK19Q9BWU1 502 aa23.37■■□□□ 1.33
DDX55-202ENST00000354291 ADGRB1O14514 1584 aa23.36■■□□□ 1.33
DDX55-202ENST00000354291 PTGER2P43116 358 aa23.36■■□□□ 1.33
DDX55-202ENST00000354291 C1QTNF8P60827 252 aa23.36■■□□□ 1.33
DDX55-202ENST00000354291 PROM2Q8N271 834 aa23.35■■□□□ 1.33
DDX55-202ENST00000354291 ATP7BP35670 1465 aa23.35■■□□□ 1.33
DDX55-202ENST00000354291 PHRF1Q9P1Y6 1649 aaKnown RBP23.34■■□□□ 1.33
DDX55-202ENST00000354291 GCP02774 474 aa23.34■■□□□ 1.33
DDX55-202ENST00000354291 DDB1Q16531 1140 aa23.34■■□□□ 1.33
DDX55-202ENST00000354291 DCAF11Q8TEB1 546 aa23.34■■□□□ 1.33
DDX55-202ENST00000354291 SYT17Q9BSW7 474 aa23.34■■□□□ 1.33
DDX55-202ENST00000354291 FHDC1Q9C0D6 1143 aaPredicted RBP23.34■■□□□ 1.33
DDX55-202ENST00000354291 OVOS2A0A0G2JMS6 1433 aa23.33■■□□□ 1.33
DDX55-202ENST00000354291 OVOS2A0A0J9YW53 1432 aa23.33■■□□□ 1.33
DDX55-202ENST00000354291 OVOS2Q6IE36 1432 aa23.33■■□□□ 1.33
DDX55-202ENST00000354291 CPDO75976 1380 aa23.33■■□□□ 1.33
DDX55-202ENST00000354291 NRKQ7Z2Y5 1582 aa23.32■■□□□ 1.32
DDX55-202ENST00000354291 NLRP13Q86W25 1043 aa23.32■■□□□ 1.32
DDX55-202ENST00000354291 CCDC61Q9Y6R9 512 aa23.32■■□□□ 1.32
DDX55-202ENST00000354291 IFFO2Q5TF58 517 aa23.31■■□□□ 1.32
DDX55-202ENST00000354291 STK32BQ9NY57 414 aa23.31■■□□□ 1.32
DDX55-202ENST00000354291 PLEKHG3A1L390 1219 aa23.29■■□□□ 1.32
DDX55-202ENST00000354291 POLR3AO14802 1390 aaPredicted RBP23.28■■□□□ 1.32
DDX55-202ENST00000354291 TOM1L2Q6ZVM7 507 aa23.28■■□□□ 1.32
DDX55-202ENST00000354291 USP19O94966 1318 aa23.28■■□□□ 1.32
DDX55-202ENST00000354291 CRB1P82279 1406 aa23.27■■□□□ 1.32
DDX55-202ENST00000354291 COL5A2P05997 1499 aaPredicted RBP23.26■■□□□ 1.31
DDX55-202ENST00000354291 SLC15A2Q16348 729 aa23.26■■□□□ 1.31
DDX55-202ENST00000354291 TXNRD1Q16881 649 aa23.26■■□□□ 1.31
DDX55-202ENST00000354291 MARCH10Q8NA82 808 aaPredicted RBP23.26■■□□□ 1.31
DDX55-202ENST00000354291 CASZ1Q86V15 1759 aa23.25■■□□□ 1.31
DDX55-202ENST00000354291 PARP4Q9UKK3 1724 aaKnown RBP23.25■■□□□ 1.31
DDX55-202ENST00000354291 MTFR1LQ9H019 292 aa23.24■■□□□ 1.31
DDX55-202ENST00000354291 MYOM1P52179 1685 aa23.24■■□□□ 1.31
DDX55-202ENST00000354291 LMO7Q8WWI1 1683 aa23.24■■□□□ 1.31
DDX55-202ENST00000354291 ITSN1Q15811 1721 aa23.24■■□□□ 1.31
DDX55-202ENST00000354291 CEP350Q5VT06 3117 aa23.21■■□□□ 1.31
DDX55-202ENST00000354291 NLRP6P59044 892 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms