RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SBNO1A3KN83 1393 aa30.51■■■□□ 2.47
SDC3-202ENST00000339394 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.5■■■□□ 2.47
SDC3-202ENST00000339394 LRRC59Q96AG4 307 aaKnown RBP30.49■■■□□ 2.47
SDC3-202ENST00000339394 SPATA31A3Q5VYP0 1347 aa30.49■■■□□ 2.47
SDC3-202ENST00000339394 NSD3Q9BZ95 1437 aa30.49■■■□□ 2.47
SDC3-202ENST00000339394 AKAP12Q02952 1782 aa30.48■■■□□ 2.47
SDC3-202ENST00000339394 PER1O15534 1290 aaPredicted RBP30.48■■■□□ 2.47
SDC3-202ENST00000339394 TTC21AQ8NDW8 1320 aa30.46■■■□□ 2.47
SDC3-202ENST00000339394 LMOD2Q6P5Q4 547 aa30.45■■■□□ 2.47
SDC3-202ENST00000339394 KNSTRNQ9Y448 316 aa30.45■■■□□ 2.47
SDC3-202ENST00000339394 TNS3Q68CZ2 1445 aa30.45■■■□□ 2.47
SDC3-202ENST00000339394 MON2Q7Z3U7 1717 aa30.45■■■□□ 2.47
SDC3-202ENST00000339394 ABTB2Q8N961 1025 aa30.45■■■□□ 2.46
SDC3-202ENST00000339394 PHLPP1O60346 1717 aa30.44■■■□□ 2.46
SDC3-202ENST00000339394 COL16A1Q07092 1604 aaPredicted RBP30.44■■■□□ 2.46
SDC3-202ENST00000339394 NME9Q86XW9 330 aa30.42■■■□□ 2.46
SDC3-202ENST00000339394 TRPM3Q9HCF6 1732 aaPredicted RBP30.42■■■□□ 2.46
SDC3-202ENST00000339394 NRKQ7Z2Y5 1582 aa30.41■■■□□ 2.46
SDC3-202ENST00000339394 FYB1O15117 783 aa30.41■■■□□ 2.46
SDC3-202ENST00000339394 NUTM2GQ5VZR2 741 aa30.41■■■□□ 2.46
SDC3-202ENST00000339394 CGNL1Q0VF96 1302 aa30.4■■■□□ 2.46
SDC3-202ENST00000339394 ARHGEF10O15013 1369 aa30.39■■■□□ 2.46
SDC3-202ENST00000339394 NLRP6P59044 892 aa30.38■■■□□ 2.45
SDC3-202ENST00000339394 ZRANB1Q9UGI0 708 aa30.38■■■□□ 2.45
SDC3-202ENST00000339394 AMER1Q5JTC6 1135 aaPredicted RBP30.37■■■□□ 2.45
SDC3-202ENST00000339394 GGNBP2Q9H3C7 697 aa30.37■■■□□ 2.45
SDC3-202ENST00000339394 NLRP13Q86W25 1043 aa30.35■■■□□ 2.45
SDC3-202ENST00000339394 PNPLA6Q8IY17 1366 aa30.35■■■□□ 2.45
SDC3-202ENST00000339394 ALS2Q96Q42 1657 aa30.34■■■□□ 2.45
SDC3-202ENST00000339394 USP31Q70CQ4 1352 aa30.33■■■□□ 2.45
SDC3-202ENST00000339394 JCADQ9P266 1359 aa30.33■■■□□ 2.45
SDC3-202ENST00000339394 PLEKHG5O94827 1062 aa30.32■■■□□ 2.45
SDC3-202ENST00000339394 PIK3C2AO00443 1686 aa30.32■■■□□ 2.44
SDC3-202ENST00000339394 COG3Q96JB2 828 aa30.31■■■□□ 2.44
SDC3-202ENST00000339394 CABLES1Q8TDN4 633 aa30.3■■■□□ 2.44
SDC3-202ENST00000339394 CC2D1BQ5T0F9 858 aaKnown RBP30.28■■■□□ 2.44
SDC3-202ENST00000339394 NSD2O96028 1365 aa30.28■■■□□ 2.44
SDC3-202ENST00000339394 OVOS2A0A0J9YW53 1432 aa30.28■■■□□ 2.44
SDC3-202ENST00000339394 CNGB1Q14028 1251 aaPredicted RBP30.28■■■□□ 2.44
SDC3-202ENST00000339394 OVOS2Q6IE36 1432 aa30.28■■■□□ 2.44
SDC3-202ENST00000339394 NPC1L1Q9UHC9 1359 aa30.27■■■□□ 2.44
SDC3-202ENST00000339394 USP19O94966 1318 aa30.27■■■□□ 2.44
SDC3-202ENST00000339394 ILDR1Q86SU0 546 aaPredicted RBP30.25■■■□□ 2.43
SDC3-202ENST00000339394 GCP02774 474 aa30.24■■■□□ 2.43
SDC3-202ENST00000339394 MED1Q15648 1581 aaPredicted RBP30.23■■■□□ 2.43
SDC3-202ENST00000339394 SOX12O15370 315 aa30.22■■■□□ 2.43
SDC3-202ENST00000339394 MORC1Q86VD1 984 aa30.22■■■□□ 2.43
SDC3-202ENST00000339394 HAP1P54257 671 aaPredicted RBP30.21■■■□□ 2.43
SDC3-202ENST00000339394 SPATA31A6Q5VVP1 1343 aa30.21■■■□□ 2.43
SDC3-202ENST00000339394 COL22A1Q8NFW1 1626 aaPredicted RBP30.21■■■□□ 2.43
SDC3-202ENST00000339394 KCNH5Q8NCM2 988 aa30.2■■■□□ 2.43
SDC3-202ENST00000339394 SHPRHQ149N8 1683 aa30.2■■■□□ 2.43
SDC3-202ENST00000339394 NUTM2BA6NNL0 878 aaPredicted RBP30.2■■■□□ 2.42
SDC3-202ENST00000339394 NUTM2EB1AL46 878 aaPredicted RBP30.2■■■□□ 2.42
SDC3-202ENST00000339394 NUTM2AQ8IVF1 878 aaPredicted RBP30.2■■■□□ 2.42
SDC3-202ENST00000339394 KIF20BQ96Q89 1820 aa30.19■■■□□ 2.42
SDC3-202ENST00000339394 FBLN1P23142 703 aa30.19■■■□□ 2.42
SDC3-202ENST00000339394 TNNT2P45379 298 aaPredicted RBP30.18■■■□□ 2.42
SDC3-202ENST00000339394 SLIT3O75094 1523 aa30.17■■■□□ 2.42
SDC3-202ENST00000339394 USP54Q70EL1 1684 aa30.16■■■□□ 2.42
SDC3-202ENST00000339394 MARF1Q9Y4F3 1742 aaKnown RBP30.16■■■□□ 2.42
SDC3-202ENST00000339394 ZC3H6P61129 1189 aaKnown RBP30.15■■■□□ 2.42
SDC3-202ENST00000339394 ADAMTS2O95450 1211 aa30.12■■■□□ 2.41
SDC3-202ENST00000339394 CRYBG1Q9Y4K1 1723 aa30.11■■■□□ 2.41
SDC3-202ENST00000339394 ARHGEF25Q86VW2 580 aa30.11■■■□□ 2.41
SDC3-202ENST00000339394 NFAT5O94916 1531 aa30.1■■■□□ 2.41
SDC3-202ENST00000339394 AATKQ6ZMQ8 1374 aa30.1■■■□□ 2.41
SDC3-202ENST00000339394 KIAA0232Q92628 1395 aa30.1■■■□□ 2.41
SDC3-202ENST00000339394 PHRF1Q9P1Y6 1649 aaKnown RBP30.1■■■□□ 2.41
SDC3-202ENST00000339394 RRS1Q15050 365 aaKnown RBP30.1■■■□□ 2.41
SDC3-202ENST00000339394 PARD3Q8TEW0 1356 aa30.09■■■□□ 2.41
SDC3-202ENST00000339394 CPDO75976 1380 aa30.09■■■□□ 2.41
SDC3-202ENST00000339394 RALBP1Q15311 655 aa30.08■■■□□ 2.41
SDC3-202ENST00000339394 PRKRIP1Q9H875 184 aaPredicted RBP30.08■■■□□ 2.41
SDC3-202ENST00000339394 LRP6O75581 1613 aa30.08■■■□□ 2.41
SDC3-202ENST00000339394 ANKRD26Q9UPS8 1709 aa30.08■■■□□ 2.41
SDC3-202ENST00000339394 DIEXFQ68CQ4 756 aaKnown RBP30.07■■■□□ 2.4
SDC3-202ENST00000339394 PRDM11Q9NQV5 511 aa30.07■■■□□ 2.4
SDC3-202ENST00000339394 MAP3K19Q56UN5 1328 aa30.07■■■□□ 2.4
SDC3-202ENST00000339394 ABCA3Q99758 1704 aa30.07■■■□□ 2.4
SDC3-202ENST00000339394 ZBTB7CA1YPR0 619 aa30.07■■■□□ 2.4
SDC3-202ENST00000339394 POLKQ9UBT6 870 aa30.07■■■□□ 2.4
SDC3-202ENST00000339394 FAM83GA6ND36 823 aa30.06■■■□□ 2.4
SDC3-202ENST00000339394 CHRNA2Q15822 529 aa30.05■■■□□ 2.4
SDC3-202ENST00000339394 EMILIN1Q9Y6C2 1016 aa30.05■■■□□ 2.4
SDC3-202ENST00000339394 ANP32CO43423 234 aa30.04■■■□□ 2.4
SDC3-202ENST00000339394 PPP2R1AP30153 589 aa30.02■■■□□ 2.4
SDC3-202ENST00000339394 MEX3CQ5U5Q3 659 aaKnown RBP30.02■■■□□ 2.4
SDC3-202ENST00000339394 PPM1GO15355 546 aaPredicted RBP30.01■■■□□ 2.39
SDC3-202ENST00000339394 AMPHP49418 695 aa30.01■■■□□ 2.39
SDC3-202ENST00000339394 C8orf37Q96NL8 207 aa30.01■■■□□ 2.39
SDC3-202ENST00000339394 MTHFSP49914 203 aa29.98■■■□□ 2.39
SDC3-202ENST00000339394 AXIN2Q9Y2T1 843 aa29.98■■■□□ 2.39
SDC3-202ENST00000339394 IP6K1Q92551 441 aa29.98■■■□□ 2.39
SDC3-202ENST00000339394 NGLY1Q96IV0 654 aa29.98■■■□□ 2.39
SDC3-202ENST00000339394 HOXC9P31274 260 aa29.97■■■□□ 2.39
SDC3-202ENST00000339394 KIF24Q5T7B8 1368 aa29.96■■■□□ 2.39
SDC3-202ENST00000339394 MYBBP1AQ9BQG0 1328 aaKnown RBP29.95■■■□□ 2.39
SDC3-202ENST00000339394 HSP90AB2PQ58FF8 381 aa29.94■■■□□ 2.38
SDC3-202ENST00000339394 BTG4Q9NY30 223 aa29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms