RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 NLRP13Q86W25 1043 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.41■□□□□ 0.227e-7■■■□□ 18.1
SPTLC1-202ENST00000337841 PANK3Q9H999 370 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 USP6P35125 1406 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 PHLPP1O60346 1717 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 ITSN1Q15811 1721 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 WASHC2AQ641Q2 1341 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 TTC21AQ8NDW8 1320 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 HAP1P54257 671 aaPredicted RBP16.4■□□□□ 0.22
SPTLC1-202ENST00000337841 SPATA31A6Q5VVP1 1343 aa16.4■□□□□ 0.22
SPTLC1-202ENST00000337841 A0A1W2PP64 1363 aa16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 TNS3Q68CZ2 1445 aa16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NHSL1Q5SYE7 1610 aa16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NUTM2BA6NNL0 878 aaPredicted RBP16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NUTM2EB1AL46 878 aaPredicted RBP16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NLRP6P59044 892 aa16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NUTM2GQ5VZR2 741 aa16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 NUTM2AQ8IVF1 878 aaPredicted RBP16.39■□□□□ 0.21
SPTLC1-202ENST00000337841 PNPLA6Q8IY17 1366 aa16.38■□□□□ 0.21
SPTLC1-202ENST00000337841 PLEKHG5O94827 1062 aa16.38■□□□□ 0.21
SPTLC1-202ENST00000337841 TOPAZ1Q8N9V7 1692 aa16.37■□□□□ 0.21
SPTLC1-202ENST00000337841 CARD14Q9BXL6 1004 aa16.37■□□□□ 0.21
SPTLC1-202ENST00000337841 COL16A1Q07092 1604 aaPredicted RBP16.37■□□□□ 0.21
SPTLC1-202ENST00000337841 EDC4Q6P2E9 1401 aaKnown RBP16.36■□□□□ 0.21
SPTLC1-202ENST00000337841 SSH2Q76I76 1423 aa16.36■□□□□ 0.21
SPTLC1-202ENST00000337841 CD163L1Q9NR16 1453 aa16.36■□□□□ 0.21
SPTLC1-202ENST00000337841 ZNF316A6NFI3 1004 aaPredicted RBP16.36■□□□□ 0.21
SPTLC1-202ENST00000337841 KNSTRNQ9Y448 316 aa16.36■□□□□ 0.21
SPTLC1-202ENST00000337841 NME9Q86XW9 330 aa16.35■□□□□ 0.21
SPTLC1-202ENST00000337841 CABLES1Q8TDN4 633 aa16.35■□□□□ 0.21
SPTLC1-202ENST00000337841 MEX3CQ5U5Q3 659 aaKnown RBP16.34■□□□□ 0.21
SPTLC1-202ENST00000337841 FYB1O15117 783 aa16.33■□□□□ 0.2
SPTLC1-202ENST00000337841 COG3Q96JB2 828 aa16.33■□□□□ 0.2
SPTLC1-202ENST00000337841 CGNL1Q0VF96 1302 aa16.33■□□□□ 0.2
SPTLC1-202ENST00000337841 ADAMTS2O95450 1211 aa16.32■□□□□ 0.2
SPTLC1-202ENST00000337841 KCNA4P22459 653 aa16.32■□□□□ 0.2
SPTLC1-202ENST00000337841 KCNH5Q8NCM2 988 aa16.32■□□□□ 0.2
SPTLC1-202ENST00000337841 GCP02774 474 aa16.31■□□□□ 0.2
SPTLC1-202ENST00000337841 ZRANB1Q9UGI0 708 aa16.31■□□□□ 0.2
SPTLC1-202ENST00000337841 NSD3Q9BZ95 1437 aa16.3■□□□□ 0.2
SPTLC1-202ENST00000337841 USP31Q70CQ4 1352 aa16.3■□□□□ 0.2
SPTLC1-202ENST00000337841 GGNBP2Q9H3C7 697 aa16.3■□□□□ 0.2
SPTLC1-202ENST00000337841 DDX10Q13206 875 aaKnown RBP16.29■□□□□ 0.2
SPTLC1-202ENST00000337841 NGLY1Q96IV0 654 aa16.29■□□□□ 0.2
SPTLC1-202ENST00000337841 USP19O94966 1318 aa16.28■□□□□ 0.2
SPTLC1-202ENST00000337841 PER1O15534 1290 aaPredicted RBP16.28■□□□□ 0.2
SPTLC1-202ENST00000337841 ZC3H6P61129 1189 aaKnown RBP16.28■□□□□ 0.2
SPTLC1-202ENST00000337841 TRPM3Q9HCF6 1732 aaPredicted RBP16.28■□□□□ 0.2
SPTLC1-202ENST00000337841 AKAP12Q02952 1782 aa16.26■□□□□ 0.19
SPTLC1-202ENST00000337841 SOX12O15370 315 aa16.26■□□□□ 0.19
SPTLC1-202ENST00000337841 C8orf37Q96NL8 207 aa16.26■□□□□ 0.19
SPTLC1-202ENST00000337841 PRDM11Q9NQV5 511 aa16.26■□□□□ 0.19
SPTLC1-202ENST00000337841 SHPRHQ149N8 1683 aa16.26■□□□□ 0.19
SPTLC1-202ENST00000337841 ZBTB7CA1YPR0 619 aa16.25■□□□□ 0.19
SPTLC1-202ENST00000337841 FAM83GA6ND36 823 aa16.25■□□□□ 0.19
SPTLC1-202ENST00000337841 MORC1Q86VD1 984 aa16.25■□□□□ 0.19
SPTLC1-202ENST00000337841 AMER1Q5JTC6 1135 aaPredicted RBP16.24■□□□□ 0.19
SPTLC1-202ENST00000337841 ALS2Q96Q42 1657 aa16.24■□□□□ 0.19
SPTLC1-202ENST00000337841 MON2Q7Z3U7 1717 aa16.23■□□□□ 0.19
SPTLC1-202ENST00000337841 MYOM1P52179 1685 aa16.23■□□□□ 0.19
SPTLC1-202ENST00000337841 NSD2O96028 1365 aa16.23■□□□□ 0.19
SPTLC1-202ENST00000337841 COL22A1Q8NFW1 1626 aaPredicted RBP16.23■□□□□ 0.19
SPTLC1-202ENST00000337841 ARHGEF25Q86VW2 580 aa16.22■□□□□ 0.19
SPTLC1-202ENST00000337841 KIAA0232Q92628 1395 aa16.22■□□□□ 0.19
SPTLC1-202ENST00000337841 MED1Q15648 1581 aaPredicted RBP16.21■□□□□ 0.19
SPTLC1-202ENST00000337841 CHRNA2Q15822 529 aa16.21■□□□□ 0.19
SPTLC1-202ENST00000337841 CC2D1BQ5T0F9 858 aaKnown RBP16.21■□□□□ 0.19
SPTLC1-202ENST00000337841 FNBP4Q8N3X1 1017 aaPredicted RBP16.21■□□□□ 0.19
SPTLC1-202ENST00000337841 CPDO75976 1380 aa16.21■□□□□ 0.19
SPTLC1-202ENST00000337841 LRP6O75581 1613 aa16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 EVA1CP58658 441 aa16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 CNGB1Q14028 1251 aaPredicted RBP16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 ZNF772Q68DY9 489 aaPredicted RBP16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 USP21Q9UK80 565 aa16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 NPC1L1Q9UHC9 1359 aa16.2■□□□□ 0.18
SPTLC1-202ENST00000337841 AFF2P51816 1311 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 OVOS2A0A0J9YW53 1432 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 OVOS2Q6IE36 1432 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 NRKQ7Z2Y5 1582 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 TNNT2P45379 298 aaPredicted RBP16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 AMPHP49418 695 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 BTG4Q9NY30 223 aa16.19■□□□□ 0.18
SPTLC1-202ENST00000337841 PIK3C2AO00443 1686 aa16.18■□□□□ 0.18
SPTLC1-202ENST00000337841 FBLN1P23142 703 aa16.18■□□□□ 0.18
SPTLC1-202ENST00000337841 MAPK8IP2Q13387 824 aaPredicted RBP16.18■□□□□ 0.18
SPTLC1-202ENST00000337841 UNC5CLQ8IV45 518 aa16.18■□□□□ 0.18
SPTLC1-202ENST00000337841 AATKQ6ZMQ8 1374 aa16.17■□□□□ 0.18
SPTLC1-202ENST00000337841 SLIT3O75094 1523 aa16.17■□□□□ 0.18
SPTLC1-202ENST00000337841 RRS1Q15050 365 aaKnown RBP16.16■□□□□ 0.18
SPTLC1-202ENST00000337841 IP6K1Q92551 441 aa16.16■□□□□ 0.18
SPTLC1-202ENST00000337841 QTRT2Q9H974 415 aaKnown RBP16.16■□□□□ 0.18
SPTLC1-202ENST00000337841 MAP3K19Q56UN5 1328 aa16.16■□□□□ 0.18
SPTLC1-202ENST00000337841 PPM1GO15355 546 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-202ENST00000337841 TRPC5Q9UL62 973 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1-202ENST00000337841 STRN4Q9NRL3 753 aa16.14■□□□□ 0.17
SPTLC1-202ENST00000337841 POLKQ9UBT6 870 aa16.14■□□□□ 0.17
SPTLC1-202ENST00000337841 AXIN2Q9Y2T1 843 aa16.14■□□□□ 0.17
SPTLC1-202ENST00000337841 CCDC9Q9Y3X0 531 aaKnown RBP16.14■□□□□ 0.17
SPTLC1-202ENST00000337841 CSB-PGBD3P0DP91 1061 aa16.12■□□□□ 0.17
SPTLC1-202ENST00000337841 HOXC9P31274 260 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms