RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 DCTN1Q14203 1278 aa16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 EFCAB6Q5THR3 1501 aa16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 RRS1Q15050 365 aaKnown RBP16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 L1TD1Q5T7N2 865 aaKnown RBP16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 CHMP5Q9NZZ3 219 aa16.16■□□□□ 0.18
HMGCS1-201ENST00000325110 ZRANB1Q9UGI0 708 aa16.14■□□□□ 0.17
HMGCS1-201ENST00000325110 SLC52A1Q9NWF4 448 aa16.14■□□□□ 0.17
HMGCS1-201ENST00000325110 MCM4P33991 863 aa16.14■□□□□ 0.17
HMGCS1-201ENST00000325110 PHACTR3Q96KR7 559 aa16.14■□□□□ 0.17
HMGCS1-201ENST00000325110 TSPYL6Q8N831 410 aa16.13■□□□□ 0.17
HMGCS1-201ENST00000325110 PHF23Q9BUL5 403 aaPredicted RBP16.13■□□□□ 0.17
HMGCS1-201ENST00000325110 CHD1LQ86WJ1 897 aa16.13■□□□□ 0.17
HMGCS1-201ENST00000325110 FAM83GA6ND36 823 aa16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 NME9Q86XW9 330 aa16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 NCLP19338 710 aaKnown RBP16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 TRAK2O60296 914 aa16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 CT47B1P0C2W7 299 aaPredicted RBP16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 TXNDC2Q86VQ3 553 aa16.12■□□□□ 0.17
HMGCS1-201ENST00000325110 PLEKHG5O94827 1062 aa16.11■□□□□ 0.17
HMGCS1-201ENST00000325110 NCKAP5LQ9HCH0 1330 aa16.11■□□□□ 0.17
HMGCS1-201ENST00000325110 PPRC1Q5VV67 1664 aaKnown RBP16.11■□□□□ 0.17
HMGCS1-201ENST00000325110 NSD2O96028 1365 aa16.11■□□□□ 0.17
HMGCS1-201ENST00000325110 PLEKHF1Q96S99 279 aa16.11■□□□□ 0.17
HMGCS1-201ENST00000325110 TWISTNBQ3B726 338 aaPredicted RBP16.1■□□□□ 0.17
HMGCS1-201ENST00000325110 ZBTB40Q9NUA8 1239 aa16.1■□□□□ 0.17
HMGCS1-201ENST00000325110 FCHSD2O94868 740 aa16.1■□□□□ 0.17
HMGCS1-201ENST00000325110 HDAC1Q13547 482 aaPredicted RBP16.1■□□□□ 0.17
HMGCS1-201ENST00000325110 INO80Q9ULG1 1556 aaPredicted RBP16.09■□□□□ 0.17
HMGCS1-201ENST00000325110 COG3Q96JB2 828 aa16.09■□□□□ 0.17
HMGCS1-201ENST00000325110 PANK2Q9BZ23 570 aa16.09■□□□□ 0.17
HMGCS1-201ENST00000325110 MROH2AA6NES4 1674 aa16.09■□□□□ 0.17
HMGCS1-201ENST00000325110 SLC4A10Q6U841 1118 aa16.08■□□□□ 0.17
HMGCS1-201ENST00000325110 POLKQ9UBT6 870 aa16.08■□□□□ 0.17
HMGCS1-201ENST00000325110 NAP1L5Q96NT1 182 aaPredicted RBP16.08■□□□□ 0.16
HMGCS1-201ENST00000325110 GNAI1P63096 354 aa16.08■□□□□ 0.16
HMGCS1-201ENST00000325110 CALD1Q05682 793 aaKnown RBP16.08■□□□□ 0.16
HMGCS1-201ENST00000325110 NFE2L2Q16236 605 aa16.08■□□□□ 0.16
HMGCS1-201ENST00000325110 SMC5Q8IY18 1101 aa16.07■□□□□ 0.16
HMGCS1-201ENST00000325110 RBM42Q9BTD8 480 aaKnown RBP16.07■□□□□ 0.16
HMGCS1-201ENST00000325110 POGZQ7Z3K3 1410 aa16.07■□□□□ 0.16
HMGCS1-201ENST00000325110 ANTXR1Q9H6X2 564 aa16.07■□□□□ 0.16
HMGCS1-201ENST00000325110 ABCC11Q96J66 1382 aa16.07■□□□□ 0.16
HMGCS1-201ENST00000325110 QRICH2Q9H0J4 1663 aa16.06■□□□□ 0.16
HMGCS1-201ENST00000325110 CHMP4BQ9H444 224 aaKnown RBP16.06■□□□□ 0.16
HMGCS1-201ENST00000325110 MBIPQ9NS73 344 aa16.06■□□□□ 0.16
HMGCS1-201ENST00000325110 ARAP3Q8WWN8 1544 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 FAM69CQ0P6D2 419 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 KRT24Q2M2I5 525 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 TRIM44Q96DX7 344 aaPredicted RBP16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 ADGRB3O60242 1522 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 DEPDC5O75140 1603 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 NUCB1Q02818 461 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 TPRNQ4KMQ1 711 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 GBP4Q96PP9 640 aa16.05■□□□□ 0.16
HMGCS1-201ENST00000325110 MROH1Q8NDA8 1641 aa16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 FOXD4L5Q5VV16 416 aaPredicted RBP16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 C8orf58Q8NAV2 365 aa16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 FOXD4L4Q8WXT5 416 aaPredicted RBP16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 RSPH6AQ9H0K4 717 aa16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 VWDEQ8N2E2 1590 aa16.04■□□□□ 0.16
HMGCS1-201ENST00000325110 SULT6B1Q6IMI4 303 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 IQSEC2Q5JU85 1478 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 DDX11L8A8MPP1 907 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 NECTIN2Q92692 538 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 TULP4Q9NRJ4 1543 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 KIDINS220Q9ULH0 1771 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 GOLGA6L22H0YM25 854 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 VAMP4O75379 141 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 ALDH1L2Q3SY69 923 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 MIS18AQ9NYP9 233 aa16.03■□□□□ 0.16
HMGCS1-201ENST00000325110 XRCC6P12956 609 aaKnown RBP eCLIP16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 ABCA9Q8IUA7 1624 aa16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 YTHDC2Q9H6S0 1430 aaKnown RBP16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 IL16Q14005 1332 aa16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 TBC1D9Q6ZT07 1266 aa16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 MCM10Q7L590 875 aa16.02■□□□□ 0.16
HMGCS1-201ENST00000325110 KIAA1210Q9ULL0 1709 aa16.02■□□□□ 0.15
HMGCS1-201ENST00000325110 YEATS2Q9ULM3 1422 aa16.02■□□□□ 0.15
HMGCS1-201ENST00000325110 NOL8Q76FK4 1167 aaKnown RBP16.02■□□□□ 0.15
HMGCS1-201ENST00000325110 FAM43AQ8N2R8 423 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 PUS7Q96PZ0 661 aaKnown RBP16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 GLI2P10070 1586 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 LMOD3Q0VAK6 560 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 C14orf37Q86TY3 774 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 AEBP1Q8IUX7 1158 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 API5Q9BZZ5 524 aaKnown RBP16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 ADGRB1O14514 1584 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 SMARCA5O60264 1052 aaPredicted RBP16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 GCC1Q96CN9 775 aa16.01■□□□□ 0.15
HMGCS1-201ENST00000325110 NRXN1Q9ULB1 1477 aa16■□□□□ 0.15
HMGCS1-201ENST00000325110 ZBTB7CA1YPR0 619 aa16■□□□□ 0.15
HMGCS1-201ENST00000325110 MRPL50Q8N5N7 158 aaKnown RBP16■□□□□ 0.15
HMGCS1-201ENST00000325110 TNPO1Q92973 898 aaKnown RBP16■□□□□ 0.15
HMGCS1-201ENST00000325110 ABCC3O15438 1527 aa16■□□□□ 0.15
HMGCS1-201ENST00000325110 C16orf71Q8IYS4 520 aaPredicted RBP16■□□□□ 0.15
HMGCS1-201ENST00000325110 NUDT16Q96DE0 195 aaKnown RBP16■□□□□ 0.15
HMGCS1-201ENST00000325110 ZBTB7BO15156 539 aaPredicted RBP15.99■□□□□ 0.15
HMGCS1-201ENST00000325110 ANP32BQ92688 251 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms