RNA–Protein interactions for RNA: ENST00000306658.7

KRT28-201, Transcript of keratin 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KRT28, Length 1,685 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28-201ENST00000306658 NME9Q86XW9 330 aa23.46■■□□□ 1.35
KRT28-201ENST00000306658 PHF8Q9UPP1 1060 aa23.46■■□□□ 1.35
KRT28-201ENST00000306658 COG3Q96JB2 828 aa23.45■■□□□ 1.34
KRT28-201ENST00000306658 CFAP53Q96M91 514 aa23.45■■□□□ 1.34
KRT28-201ENST00000306658 TTC21AQ8NDW8 1320 aa23.45■■□□□ 1.34
KRT28-201ENST00000306658 SCAF1Q9H7N4 1312 aaKnown RBP23.45■■□□□ 1.34
KRT28-201ENST00000306658 NRKQ7Z2Y5 1582 aa23.44■■□□□ 1.34
KRT28-201ENST00000306658 SSH2Q76I76 1423 aa23.44■■□□□ 1.34
KRT28-201ENST00000306658 ATF3P18847 181 aa23.43■■□□□ 1.34
KRT28-201ENST00000306658 ESCO1Q5FWF5 840 aa23.43■■□□□ 1.34
KRT28-201ENST00000306658 DCCP43146 1447 aa23.43■■□□□ 1.34
KRT28-201ENST00000306658 ZBED9Q6R2W3 1325 aa23.41■■□□□ 1.34
KRT28-201ENST00000306658 ADAMTS8Q9UP79 889 aa23.41■■□□□ 1.34
KRT28-201ENST00000306658 ZNF335Q9H4Z2 1342 aaPredicted RBP23.39■■□□□ 1.33
KRT28-201ENST00000306658 MSH6P52701 1360 aa23.38■■□□□ 1.33
KRT28-201ENST00000306658 CADPS2Q86UW7 1296 aa23.38■■□□□ 1.33
KRT28-201ENST00000306658 ZRANB1Q9UGI0 708 aa23.38■■□□□ 1.33
KRT28-201ENST00000306658 AATKQ6ZMQ8 1374 aa23.37■■□□□ 1.33
KRT28-201ENST00000306658 C1orf167Q5SNV9 1468 aa23.36■■□□□ 1.33
KRT28-201ENST00000306658 BLMP54132 1417 aaPredicted RBP23.35■■□□□ 1.33
KRT28-201ENST00000306658 PSME1Q06323 249 aa23.35■■□□□ 1.33
KRT28-201ENST00000306658 ORAI2Q96SN7 254 aa23.35■■□□□ 1.33
KRT28-201ENST00000306658 LRRC7Q96NW7 1537 aa23.35■■□□□ 1.33
KRT28-201ENST00000306658 OVOS2A0A0J9YW53 1432 aa23.34■■□□□ 1.33
KRT28-201ENST00000306658 OVOS2Q6IE36 1432 aa23.34■■□□□ 1.33
KRT28-201ENST00000306658 POLKQ9UBT6 870 aa23.34■■□□□ 1.33
KRT28-201ENST00000306658 USP31Q70CQ4 1352 aa23.33■■□□□ 1.33
KRT28-201ENST00000306658 MAP2P11137 1827 aaKnown RBP23.33■■□□□ 1.33
KRT28-201ENST00000306658 MST1RQ04912 1400 aa23.33■■□□□ 1.32
KRT28-201ENST00000306658 NUDCQ9Y266 331 aa23.32■■□□□ 1.32
KRT28-201ENST00000306658 PAK3O75914 559 aaPredicted RBP23.32■■□□□ 1.32
KRT28-201ENST00000306658 XIRP1Q702N8 1843 aaKnown RBP23.31■■□□□ 1.32
KRT28-201ENST00000306658 PNPLA6Q8IY17 1366 aa23.31■■□□□ 1.32
KRT28-201ENST00000306658 KIF1AQ12756 1690 aa23.31■■□□□ 1.32
KRT28-201ENST00000306658 ABTB2Q8N961 1025 aa23.3■■□□□ 1.32
KRT28-201ENST00000306658 SHPRHQ149N8 1683 aa23.3■■□□□ 1.32
KRT28-201ENST00000306658 PPM1GO15355 546 aaPredicted RBP23.29■■□□□ 1.32
KRT28-201ENST00000306658 FOXO3O43524 673 aa23.29■■□□□ 1.32
KRT28-201ENST00000306658 FBLN1P23142 703 aa23.29■■□□□ 1.32
KRT28-201ENST00000306658 NLRP6P59044 892 aa23.29■■□□□ 1.32
KRT28-201ENST00000306658 PIK3C2AO00443 1686 aa23.28■■□□□ 1.32
KRT28-201ENST00000306658 SMG6Q86US8 1419 aaKnown RBP23.28■■□□□ 1.32
KRT28-201ENST00000306658 DIAPH1O60610 1272 aaKnown RBP23.28■■□□□ 1.32
KRT28-201ENST00000306658 EMILIN1Q9Y6C2 1016 aa23.27■■□□□ 1.32
KRT28-201ENST00000306658 COL3A1P02461 1466 aaPredicted RBP23.27■■□□□ 1.32
KRT28-201ENST00000306658 RRS1Q15050 365 aaKnown RBP23.25■■□□□ 1.31
KRT28-201ENST00000306658 CDK12Q9NYV4 1490 aaPredicted RBP23.25■■□□□ 1.31
KRT28-201ENST00000306658 U2AF1L5P0DN76 240 aaPredicted RBP23.24■■□□□ 1.31
KRT28-201ENST00000306658 U2AF1Q01081 240 aaKnown RBP eCLIP23.24■■□□□ 1.31
KRT28-201ENST00000306658 KRT28Q7Z3Y7 464 aa23.24■■□□□ 1.31
KRT28-201ENST00000306658 USP54Q70EL1 1684 aa23.23■■□□□ 1.31
KRT28-201ENST00000306658 SENP3-EIF4A1A0A087X0R7 540 aa23.22■■□□□ 1.31
KRT28-201ENST00000306658 U2SURPO15042 1029 aaKnown RBP23.22■■□□□ 1.31
KRT28-201ENST00000306658 CCDC146Q8IYE0 955 aa23.22■■□□□ 1.31
KRT28-201ENST00000306658 NUTM2GQ5VZR2 741 aa23.22■■□□□ 1.31
KRT28-201ENST00000306658 NGEFQ8N5V2 710 aa23.21■■□□□ 1.31
KRT28-201ENST00000306658 SALL2Q9Y467 1007 aaPredicted RBP23.21■■□□□ 1.31
KRT28-201ENST00000306658 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
KRT28-201ENST00000306658 RUNDC1Q96C34 613 aa23.2■■□□□ 1.3
KRT28-201ENST00000306658 SLAIN2Q9P270 581 aa23.2■■□□□ 1.3
KRT28-201ENST00000306658 NPHP3Q7Z494 1330 aa23.2■■□□□ 1.3
KRT28-201ENST00000306658 SOX12O15370 315 aa23.19■■□□□ 1.3
KRT28-201ENST00000306658 PDE3BQ13370 1112 aa23.19■■□□□ 1.3
KRT28-201ENST00000306658 PNNQ9H307 717 aaKnown RBP23.19■■□□□ 1.3
KRT28-201ENST00000306658 APAF1O14727 1248 aa23.18■■□□□ 1.3
KRT28-201ENST00000306658 IL13P35225 146 aa23.16■■□□□ 1.3
KRT28-201ENST00000306658 KCNH5Q8NCM2 988 aa23.16■■□□□ 1.3
KRT28-201ENST00000306658 MARF1Q9Y4F3 1742 aaKnown RBP23.16■■□□□ 1.3
KRT28-201ENST00000306658 MAP3K19Q56UN5 1328 aa23.16■■□□□ 1.3
KRT28-201ENST00000306658 TRPM3Q9HCF6 1732 aaPredicted RBP23.16■■□□□ 1.3
KRT28-201ENST00000306658 SBNO1A3KN83 1393 aa23.15■■□□□ 1.3
KRT28-201ENST00000306658 KIF24Q5T7B8 1368 aa23.15■■□□□ 1.3
KRT28-201ENST00000306658 LMOD2Q6P5Q4 547 aa23.15■■□□□ 1.3
KRT28-201ENST00000306658 BRINP3Q76B58 766 aa23.15■■□□□ 1.3
KRT28-201ENST00000306658 FCHSD2O94868 740 aa23.14■■□□□ 1.29
KRT28-201ENST00000306658 AMPHP49418 695 aa23.14■■□□□ 1.29
KRT28-201ENST00000306658 FLT4P35916 1363 aa23.14■■□□□ 1.29
KRT28-201ENST00000306658 TCP11L2Q8N4U5 519 aa23.12■■□□□ 1.29
KRT28-201ENST00000306658 HSP90AB2PQ58FF8 381 aa23.11■■□□□ 1.29
KRT28-201ENST00000306658 DDX17Q92841 729 aaKnown RBP23.11■■□□□ 1.29
KRT28-201ENST00000306658 PEAK1Q9H792 1746 aa23.11■■□□□ 1.29
KRT28-201ENST00000306658 NCBP3Q53F19 620 aaKnown RBP23.1■■□□□ 1.29
KRT28-201ENST00000306658 PLEKHF1Q96S99 279 aa23.1■■□□□ 1.29
KRT28-201ENST00000306658 MAPK8IP3Q9UPT6 1336 aa23.1■■□□□ 1.29
KRT28-201ENST00000306658 NEFMP07197 916 aa23.09■■□□□ 1.29
KRT28-201ENST00000306658 EIF4A2Q14240 407 aaKnown RBP23.09■■□□□ 1.29
KRT28-201ENST00000306658 LTBP4Q8N2S1 1624 aa23.09■■□□□ 1.29
KRT28-201ENST00000306658 USP19O94966 1318 aa23.09■■□□□ 1.29
KRT28-201ENST00000306658 GTF3C3Q9Y5Q9 886 aa23.09■■□□□ 1.29
KRT28-201ENST00000306658 ALS2Q96Q42 1657 aa23.08■■□□□ 1.29
KRT28-201ENST00000306658 ZNF521Q96K83 1311 aa23.08■■□□□ 1.29
KRT28-201ENST00000306658 GCP02774 474 aa23.08■■□□□ 1.29
KRT28-201ENST00000306658 PXDNQ92626 1479 aa23.08■■□□□ 1.28
KRT28-201ENST00000306658 RTL1A6NKG5 1358 aa23.07■■□□□ 1.28
KRT28-201ENST00000306658 RSPH6AQ9H0K4 717 aa23.07■■□□□ 1.28
KRT28-201ENST00000306658 SLIT3O75094 1523 aa23.07■■□□□ 1.28
KRT28-201ENST00000306658 IQSEC2Q5JU85 1478 aa23.07■■□□□ 1.28
KRT28-201ENST00000306658 HOXC9P31274 260 aa23.06■■□□□ 1.28
KRT28-201ENST00000306658 NFAT5O94916 1531 aa23.06■■□□□ 1.28
KRT28-201ENST00000306658 TNS3Q68CZ2 1445 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms