RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 RALGAPBQ86X10 1494 aa37.65■■■■□ 3.62
CDKN2A-201ENST00000304494 PPIP5K1Q6PFW1 1433 aa37.65■■■■□ 3.62
CDKN2A-201ENST00000304494 SLIT2O94813 1529 aa37.65■■■■□ 3.62
CDKN2A-201ENST00000304494 CARD11Q9BXL7 1154 aa37.64■■■■□ 3.62
CDKN2A-201ENST00000304494 RGS12O14924 1447 aa37.63■■■■□ 3.61
CDKN2A-201ENST00000304494 TNKS1BP1Q9C0C2 1729 aaKnown RBP37.62■■■■□ 3.61
CDKN2A-201ENST00000304494 UNC5CLQ8IV45 518 aa37.62■■■■□ 3.61
CDKN2A-201ENST00000304494 GJD4Q96KN9 370 aaPredicted RBP37.55■■■■□ 3.6
CDKN2A-201ENST00000304494 SBNO2Q9Y2G9 1366 aa37.54■■■■□ 3.6
CDKN2A-201ENST00000304494 PLCH1Q4KWH8 1693 aa37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 NWD2Q9ULI1 1742 aa37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 FAM83GA6ND36 823 aa37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 CABP1Q9NZU7 370 aa37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 BRD4O60885 1362 aaPredicted RBP37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 CRYBG1Q9Y4K1 1723 aa37.53■■■■□ 3.6
CDKN2A-201ENST00000304494 PCGF6Q9BYE7 350 aa37.51■■■■□ 3.6
CDKN2A-201ENST00000304494 ABTB2Q8N961 1025 aa37.48■■■■□ 3.59
CDKN2A-201ENST00000304494 ATAD2Q6PL18 1390 aa37.47■■■■□ 3.59
CDKN2A-201ENST00000304494 CLSPNQ9HAW4 1339 aa37.47■■■■□ 3.59
CDKN2A-201ENST00000304494 COL14A1Q05707 1796 aaKnown RBP37.47■■■■□ 3.59
CDKN2A-201ENST00000304494 VPS72Q15906 364 aa37.46■■■■□ 3.59
CDKN2A-201ENST00000304494 UPF1Q92900 1129 aaKnown RBP eCLIP37.46■■■■□ 3.59
CDKN2A-201ENST00000304494 NUTM2GQ5VZR2 741 aa37.45■■■■□ 3.59
CDKN2A-201ENST00000304494 USP6P35125 1406 aa37.44■■■■□ 3.58
CDKN2A-201ENST00000304494 PHRF1Q9P1Y6 1649 aaKnown RBP37.44■■■■□ 3.58
CDKN2A-201ENST00000304494 GLI3P10071 1580 aa37.42■■■■□ 3.58
CDKN2A-201ENST00000304494 PRDM11Q9NQV5 511 aa37.42■■■■□ 3.58
CDKN2A-201ENST00000304494 BTG4Q9NY30 223 aa37.42■■■■□ 3.58
CDKN2A-201ENST00000304494 CCDC9Q9Y3X0 531 aaKnown RBP37.41■■■■□ 3.58
CDKN2A-201ENST00000304494 NLRP13Q86W25 1043 aa37.4■■■■□ 3.58
CDKN2A-201ENST00000304494 ZNF692Q9BU19 519 aaPredicted RBP37.4■■■■□ 3.58
CDKN2A-201ENST00000304494 TIMELESSQ9UNS1 1208 aa37.39■■■■□ 3.58
CDKN2A-201ENST00000304494 KIAA0232Q92628 1395 aa37.38■■■■□ 3.57
CDKN2A-201ENST00000304494 USP19O94966 1318 aa37.37■■■■□ 3.57
CDKN2A-201ENST00000304494 NRAPQ86VF7 1730 aa37.37■■■■□ 3.57
CDKN2A-201ENST00000304494 SSH2Q76I76 1423 aa37.35■■■■□ 3.57
CDKN2A-201ENST00000304494 ZC3H6P61129 1189 aaKnown RBP37.34■■■■□ 3.57
CDKN2A-201ENST00000304494 NRKQ7Z2Y5 1582 aa37.34■■■■□ 3.57
CDKN2A-201ENST00000304494 SLC24A1O60721 1099 aa37.32■■■■□ 3.56
CDKN2A-201ENST00000304494 AKAP12Q02952 1782 aa37.3■■■■□ 3.56
CDKN2A-201ENST00000304494 CPSF1Q10570 1443 aaKnown RBP37.3■■■■□ 3.56
CDKN2A-201ENST00000304494 NLRP6P59044 892 aa37.29■■■■□ 3.56
CDKN2A-201ENST00000304494 CHRNA2Q15822 529 aa37.29■■■■□ 3.56
CDKN2A-201ENST00000304494 PUS7Q96PZ0 661 aaKnown RBP37.29■■■■□ 3.56
CDKN2A-201ENST00000304494 CPDO75976 1380 aa37.29■■■■□ 3.56
CDKN2A-201ENST00000304494 ST20-MTHFSA0A0A6YYL1 179 aa37.28■■■■□ 3.56
CDKN2A-201ENST00000304494 ONECUT3O60422 494 aaPredicted RBP37.28■■■■□ 3.56
CDKN2A-201ENST00000304494 GCP02774 474 aa37.28■■■■□ 3.56
CDKN2A-201ENST00000304494 KTN1Q86UP2 1357 aaKnown RBP37.27■■■■□ 3.56
CDKN2A-201ENST00000304494 SEPT12Q8IYM1 358 aa37.26■■■■□ 3.56
CDKN2A-201ENST00000304494 TTC21BQ7Z4L5 1316 aa37.26■■■■□ 3.56
CDKN2A-201ENST00000304494 TTC21AQ8NDW8 1320 aa37.26■■■■□ 3.56
CDKN2A-201ENST00000304494 TESK2Q96S53 571 aa37.25■■■■□ 3.55
CDKN2A-201ENST00000304494 PIK3C2AO00443 1686 aa37.25■■■■□ 3.55
CDKN2A-201ENST00000304494 SPATA31A5Q5VU36 1347 aa37.23■■■■□ 3.55
CDKN2A-201ENST00000304494 SPATA31A7Q8IWB4 1347 aa37.23■■■■□ 3.55
CDKN2A-201ENST00000304494 TMC1Q8TDI8 760 aa37.23■■■■□ 3.55
CDKN2A-201ENST00000304494 SLIT3O75094 1523 aa37.22■■■■□ 3.55
CDKN2A-201ENST00000304494 USP47Q96K76 1375 aa37.2■■■■□ 3.55
CDKN2A-201ENST00000304494 CCER1Q8TC90 406 aaPredicted RBP37.2■■■■□ 3.55
CDKN2A-201ENST00000304494 MON2Q7Z3U7 1717 aa37.19■■■■□ 3.54
CDKN2A-201ENST00000304494 FAM98CQ17RN3 349 aaKnown RBP37.19■■■■□ 3.54
CDKN2A-201ENST00000304494 HDGFL2Q7Z4V5 671 aaPredicted RBP37.19■■■■□ 3.54
CDKN2A-201ENST00000304494 STRN4Q9NRL3 753 aa37.19■■■■□ 3.54
CDKN2A-201ENST00000304494 A0A0G2JS52 829 aa37.18■■■■□ 3.54
CDKN2A-201ENST00000304494 MYT1Q01538 1121 aa37.18■■■■□ 3.54
CDKN2A-201ENST00000304494 EVA1CP58658 441 aa37.17■■■■□ 3.54
CDKN2A-201ENST00000304494 EP400Q96L91 3159 aa37.17■■■■□ 3.54
CDKN2A-201ENST00000304494 LMO7Q8WWI1 1683 aa37.16■■■■□ 3.54
CDKN2A-201ENST00000304494 CD163L1Q9NR16 1453 aa37.16■■■■□ 3.54
CDKN2A-201ENST00000304494 SLC12A5Q9H2X9 1139 aa37.16■■■■□ 3.54
CDKN2A-201ENST00000304494 TERF2IPQ9NYB0 399 aa37.16■■■■□ 3.54
CDKN2A-201ENST00000304494 NINLQ9Y2I6 1382 aa37.16■■■■□ 3.54
CDKN2A-201ENST00000304494 BRWD3Q6RI45 1802 aa37.15■■■■□ 3.54
CDKN2A-201ENST00000304494 SPATA31A1Q5TZJ5 1347 aa37.14■■■■□ 3.54
CDKN2A-201ENST00000304494 CCDC125Q86Z20 511 aa37.14■■■■□ 3.54
CDKN2A-201ENST00000304494 KCNH5Q8NCM2 988 aa37.14■■■■□ 3.54
CDKN2A-201ENST00000304494 CAMTA1Q9Y6Y1 1673 aa37.14■■■■□ 3.54
CDKN2A-201ENST00000304494 KRT27Q7Z3Y8 459 aa37.13■■■■□ 3.53
CDKN2A-201ENST00000304494 AATKQ6ZMQ8 1374 aa37.1■■■■□ 3.53
CDKN2A-201ENST00000304494 TMF1P82094 1093 aa37.1■■■■□ 3.53
CDKN2A-201ENST00000304494 ZBTB7CA1YPR0 619 aa37.09■■■■□ 3.53
CDKN2A-201ENST00000304494 SUGP2Q8IX01 1082 aaKnown RBP eCLIP37.09■■■■□ 3.53
CDKN2A-201ENST00000304494 EDC4Q6P2E9 1401 aaKnown RBP37.09■■■■□ 3.53
CDKN2A-201ENST00000304494 A0A1W2PP64 1363 aa37.07■■■■□ 3.53
CDKN2A-201ENST00000304494 COL5A2P05997 1499 aaPredicted RBP37.06■■■■□ 3.52
CDKN2A-201ENST00000304494 THSD7AQ9UPZ6 1657 aa37.05■■■■□ 3.52
CDKN2A-201ENST00000304494 USP31Q70CQ4 1352 aa37.05■■■■□ 3.52
CDKN2A-201ENST00000304494 LARP1Q6PKG0 1096 aaKnown RBP37.05■■■■□ 3.52
CDKN2A-201ENST00000304494 USP35Q9P2H5 1018 aa37.03■■■■□ 3.52
CDKN2A-201ENST00000304494 BLMP54132 1417 aaPredicted RBP37.02■■■■□ 3.52
CDKN2A-201ENST00000304494 CDCA8Q53HL2 280 aa37.02■■■■□ 3.52
CDKN2A-201ENST00000304494 ARHGEF25Q86VW2 580 aa37.02■■■■□ 3.52
CDKN2A-201ENST00000304494 SOX12O15370 315 aa37.01■■■■□ 3.52
CDKN2A-201ENST00000304494 BARGINQ6ZT62 677 aa37.01■■■■□ 3.52
CDKN2A-201ENST00000304494 NME9Q86XW9 330 aa37.01■■■■□ 3.52
CDKN2A-201ENST00000304494 USP54Q70EL1 1684 aa37.01■■■■□ 3.52
CDKN2A-201ENST00000304494 NFAT5O94916 1531 aa37■■■■□ 3.51
CDKN2A-201ENST00000304494 TCP11L2Q8N4U5 519 aa36.99■■■■□ 3.51
CDKN2A-201ENST00000304494 THRAP3Q9Y2W1 955 aaKnown RBP36.99■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms