RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SBNO2Q9Y2G9 1366 aa13.11□□□□□ -0.31
HMGN1-201ENST00000288344 POTEHQ6S545 545 aa13.11□□□□□ -0.31
HMGN1-201ENST00000288344 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
HMGN1-201ENST00000288344 COL22A1Q8NFW1 1626 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-201ENST00000288344 SLC24A1O60721 1099 aa13.1□□□□□ -0.31
HMGN1-201ENST00000288344 TESK2Q96S53 571 aa13.1□□□□□ -0.31
HMGN1-201ENST00000288344 CCDC61Q9Y6R9 512 aa13.1□□□□□ -0.31
HMGN1-201ENST00000288344 SBNO1A3KN83 1393 aa13.09□□□□□ -0.31
HMGN1-201ENST00000288344 POLR3AO14802 1390 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-201ENST00000288344 VASPP50552 380 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-201ENST00000288344 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-201ENST00000288344 PMFBP1Q8TBY8 1022 aa13.09□□□□□ -0.31
HMGN1-201ENST00000288344 TOPAZ1Q8N9V7 1692 aa13.08□□□□□ -0.32
HMGN1-201ENST00000288344 QRICH2Q9H0J4 1663 aa13.08□□□□□ -0.32
HMGN1-201ENST00000288344 EIF3AQ14152 1382 aaKnown RBP13.08□□□□□ -0.32
HMGN1-201ENST00000288344 TRPM3Q9HCF6 1732 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-201ENST00000288344 REM2Q8IYK8 340 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-201ENST00000288344 CARD11Q9BXL7 1154 aa13.08□□□□□ -0.32
HMGN1-201ENST00000288344 SSUH2Q9Y2M2 353 aa13.08□□□□□ -0.32
HMGN1-201ENST00000288344 SSH2Q76I76 1423 aa13.06□□□□□ -0.32
HMGN1-201ENST00000288344 POTEAQ6S8J7 498 aa13.06□□□□□ -0.32
HMGN1-201ENST00000288344 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
HMGN1-201ENST00000288344 PUS7Q96PZ0 661 aaKnown RBP13.05□□□□□ -0.32
HMGN1-201ENST00000288344 ALS2Q96Q42 1657 aa13.05□□□□□ -0.32
HMGN1-201ENST00000288344 CCER1Q8TC90 406 aaPredicted RBP13.04□□□□□ -0.32
HMGN1-201ENST00000288344 ACEP12821 1306 aa13.04□□□□□ -0.32
HMGN1-201ENST00000288344 ST20-MTHFSA0A0A6YYL1 179 aa13.03□□□□□ -0.32
HMGN1-201ENST00000288344 PSME1Q06323 249 aa13.03□□□□□ -0.32
HMGN1-201ENST00000288344 IFNLR1Q8IU57 520 aaPredicted RBP13.03□□□□□ -0.32
HMGN1-201ENST00000288344 FNBP4Q8N3X1 1017 aaPredicted RBP13.03□□□□□ -0.32
HMGN1-201ENST00000288344 EVC2Q86UK5 1308 aa13.03□□□□□ -0.32
HMGN1-201ENST00000288344 TNS3Q68CZ2 1445 aa13.03□□□□□ -0.32
HMGN1-201ENST00000288344 ITSN1Q15811 1721 aa13.02□□□□□ -0.32
HMGN1-201ENST00000288344 CABP1Q9NZU7 370 aa13.02□□□□□ -0.33
HMGN1-201ENST00000288344 CPSF1Q10570 1443 aaKnown RBP13.02□□□□□ -0.33
HMGN1-201ENST00000288344 CD163L1Q9NR16 1453 aa13.01□□□□□ -0.33
HMGN1-201ENST00000288344 PPIP5K1Q6PFW1 1433 aa13□□□□□ -0.33
HMGN1-201ENST00000288344 NUTM2BA6NNL0 878 aaPredicted RBP13□□□□□ -0.33
HMGN1-201ENST00000288344 NUTM2EB1AL46 878 aaPredicted RBP13□□□□□ -0.33
HMGN1-201ENST00000288344 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
HMGN1-201ENST00000288344 NUTM2AQ8IVF1 878 aaPredicted RBP13□□□□□ -0.33
HMGN1-201ENST00000288344 NGDNQ8NEJ9 315 aaKnown RBP13□□□□□ -0.33
HMGN1-201ENST00000288344 CRYBG1Q9Y4K1 1723 aa12.99□□□□□ -0.33
HMGN1-201ENST00000288344 CABLES1Q8TDN4 633 aa12.99□□□□□ -0.33
HMGN1-201ENST00000288344 BCL9LQ86UU0 1499 aa12.98□□□□□ -0.33
HMGN1-201ENST00000288344 ARHGEF10O15013 1369 aa12.98□□□□□ -0.33
HMGN1-201ENST00000288344 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
HMGN1-201ENST00000288344 MARF1Q9Y4F3 1742 aaKnown RBP12.98□□□□□ -0.33
HMGN1-201ENST00000288344 USP6P35125 1406 aa12.97□□□□□ -0.33
HMGN1-201ENST00000288344 USP47Q96K76 1375 aa12.97□□□□□ -0.33
HMGN1-201ENST00000288344 SLIT2O94813 1529 aa12.97□□□□□ -0.33
HMGN1-201ENST00000288344 ABCA3Q99758 1704 aa12.97□□□□□ -0.33
HMGN1-201ENST00000288344 ATAD2Q6PL18 1390 aa12.96□□□□□ -0.33
HMGN1-201ENST00000288344 AFF2P51816 1311 aa12.96□□□□□ -0.33
HMGN1-201ENST00000288344 FAM83GA6ND36 823 aa12.96□□□□□ -0.33
HMGN1-201ENST00000288344 ADAMTS2O95450 1211 aa12.96□□□□□ -0.33
HMGN1-201ENST00000288344 CHRDL2Q6WN34 429 aa12.96□□□□□ -0.33
HMGN1-201ENST00000288344 USP19O94966 1318 aa12.95□□□□□ -0.34
HMGN1-201ENST00000288344 AKAP12Q02952 1782 aa12.95□□□□□ -0.34
HMGN1-201ENST00000288344 ZNF772Q68DY9 489 aaPredicted RBP12.95□□□□□ -0.34
HMGN1-201ENST00000288344 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
HMGN1-201ENST00000288344 PITPNM1O00562 1244 aa12.93□□□□□ -0.34
HMGN1-201ENST00000288344 SPDYE1Q8NFV5 336 aaPredicted RBP12.93□□□□□ -0.34
HMGN1-201ENST00000288344 NGLY1Q96IV0 654 aa12.93□□□□□ -0.34
HMGN1-201ENST00000288344 C8orf37Q96NL8 207 aa12.93□□□□□ -0.34
HMGN1-201ENST00000288344 TTC21BQ7Z4L5 1316 aa12.93□□□□□ -0.34
HMGN1-201ENST00000288344 ATRNO75882 1429 aa12.92□□□□□ -0.34
HMGN1-201ENST00000288344 NRKQ7Z2Y5 1582 aa12.92□□□□□ -0.34
HMGN1-201ENST00000288344 SOCS7O14512 581 aa12.91□□□□□ -0.34
HMGN1-201ENST00000288344 MEX3CQ5U5Q3 659 aaKnown RBP12.91□□□□□ -0.34
HMGN1-201ENST00000288344 QTRT2Q9H974 415 aaKnown RBP12.91□□□□□ -0.34
HMGN1-201ENST00000288344 EP400Q96L91 3159 aa12.91□□□□□ -0.34
HMGN1-201ENST00000288344 MON2Q7Z3U7 1717 aa12.91□□□□□ -0.34
HMGN1-201ENST00000288344 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-201ENST00000288344 ABTB2Q8N961 1025 aa12.9□□□□□ -0.34
HMGN1-201ENST00000288344 USP21Q9UK80 565 aa12.9□□□□□ -0.34
HMGN1-201ENST00000288344 USP31Q70CQ4 1352 aa12.9□□□□□ -0.34
HMGN1-201ENST00000288344 PIK3C2AO00443 1686 aa12.9□□□□□ -0.34
HMGN1-201ENST00000288344 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.89□□□□□ -0.35
HMGN1-201ENST00000288344 C11orf95C9JLR9 678 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-201ENST00000288344 ONECUT3O60422 494 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-201ENST00000288344 GCP02774 474 aa12.89□□□□□ -0.35
HMGN1-201ENST00000288344 UNC5CLQ8IV45 518 aa12.89□□□□□ -0.35
HMGN1-201ENST00000288344 CLEC11AQ9Y240 323 aa12.89□□□□□ -0.35
HMGN1-201ENST00000288344 CPDO75976 1380 aa12.89□□□□□ -0.35
HMGN1-201ENST00000288344 CDK12Q9NYV4 1490 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-201ENST00000288344 SLIT3O75094 1523 aa12.89□□□□□ -0.35
HMGN1-201ENST00000288344 PHRF1Q9P1Y6 1649 aaKnown RBP12.89□□□□□ -0.35
HMGN1-201ENST00000288344 HSPA5P11021 654 aaKnown RBP12.88□□□□□ -0.35
HMGN1-201ENST00000288344 TMF1P82094 1093 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 NUTM2GQ5VZR2 741 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 LMOD2Q6P5Q4 547 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 A0A1W2PP64 1363 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 NWD2Q9ULI1 1742 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 TTC21AQ8NDW8 1320 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 USP54Q70EL1 1684 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 KTN1Q86UP2 1357 aaKnown RBP12.88□□□□□ -0.35
HMGN1-201ENST00000288344 NINLQ9Y2I6 1382 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 RXRBP28702 533 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 RBM6P78332 1123 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms