RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 GLI3P10071 1580 aa13.36□□□□□ -0.27
TPM3-201ENST00000271850 SPATA31A3Q5VYP0 1347 aa13.36□□□□□ -0.27
TPM3-201ENST00000271850 SIRT1Q96EB6 747 aa13.35□□□□□ -0.27
TPM3-201ENST00000271850 TRPC5Q9UL62 973 aaPredicted RBP13.35□□□□□ -0.27
TPM3-201ENST00000271850 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.35□□□□□ -0.27
TPM3-201ENST00000271850 DLC1Q96QB1 1528 aa13.34□□□□□ -0.27
TPM3-201ENST00000271850 ABCA3Q99758 1704 aa13.33□□□□□ -0.27
TPM3-201ENST00000271850 ADGRB2O60241 1585 aa13.32□□□□□ -0.28
TPM3-201ENST00000271850 TNS3Q68CZ2 1445 aa13.32□□□□□ -0.28
TPM3-201ENST00000271850 PRAM1Q96QH2 718 aa13.32□□□□□ -0.28
TPM3-201ENST00000271850 RALGAPBQ86X10 1494 aa13.31□□□□□ -0.28
TPM3-201ENST00000271850 SAFB2Q14151 953 aaKnown RBP eCLIP13.31□□□□□ -0.28
TPM3-201ENST00000271850 KRT28Q7Z3Y7 464 aa13.31□□□□□ -0.28
TPM3-201ENST00000271850 ATAD2Q6PL18 1390 aa13.31□□□□□ -0.28
TPM3-201ENST00000271850 TRPM3Q9HCF6 1732 aaPredicted RBP13.3□□□□□ -0.28
TPM3-201ENST00000271850 CABLES1Q8TDN4 633 aa13.3□□□□□ -0.28
TPM3-201ENST00000271850 GJD4Q96KN9 370 aaPredicted RBP13.3□□□□□ -0.28
TPM3-201ENST00000271850 PHF8Q9UPP1 1060 aa13.3□□□□□ -0.28
TPM3-201ENST00000271850 DHX57Q6P158 1386 aaKnown RBP13.3□□□□□ -0.28
TPM3-201ENST00000271850 DCBLD2Q96PD2 775 aa13.29□□□□□ -0.28
TPM3-201ENST00000271850 PRR36Q9H6K5 1346 aa13.29□□□□□ -0.28
TPM3-201ENST00000271850 PLCH1Q4KWH8 1693 aa13.28□□□□□ -0.28
TPM3-201ENST00000271850 POTEIP0CG38 1075 aa13.28□□□□□ -0.28
TPM3-201ENST00000271850 UNC5CLQ8IV45 518 aa13.28□□□□□ -0.28
TPM3-201ENST00000271850 SBNO1A3KN83 1393 aa13.28□□□□□ -0.28
TPM3-201ENST00000271850 BRWD3Q6RI45 1802 aa13.27□□□□□ -0.28
TPM3-201ENST00000271850 ANKARQ7Z5J8 1434 aa13.27□□□□□ -0.29
TPM3-201ENST00000271850 ALS2Q96Q42 1657 aa13.27□□□□□ -0.29
TPM3-201ENST00000271850 NRAPQ86VF7 1730 aa13.26□□□□□ -0.29
TPM3-201ENST00000271850 PMFBP1Q8TBY8 1022 aa13.26□□□□□ -0.29
TPM3-201ENST00000271850 HIRIP3Q9BW71 556 aaPredicted RBP13.26□□□□□ -0.29
TPM3-201ENST00000271850 CRYBG1Q9Y4K1 1723 aa13.26□□□□□ -0.29
TPM3-201ENST00000271850 TULP4Q9NRJ4 1543 aa13.25□□□□□ -0.29
TPM3-201ENST00000271850 TRAK1Q9UPV9 953 aa13.25□□□□□ -0.29
TPM3-201ENST00000271850 ARHGEF28Q8N1W1 1705 aaKnown RBP13.25□□□□□ -0.29
TPM3-201ENST00000271850 NWD2Q9ULI1 1742 aa13.25□□□□□ -0.29
TPM3-201ENST00000271850 MINK1Q8N4C8 1332 aaPredicted RBP13.23□□□□□ -0.29
TPM3-201ENST00000271850 FAM83GA6ND36 823 aa13.23□□□□□ -0.29
TPM3-201ENST00000271850 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
TPM3-201ENST00000271850 KDM2AQ9Y2K7 1162 aa13.23□□□□□ -0.29
TPM3-201ENST00000271850 ATP7BP35670 1465 aa13.23□□□□□ -0.29
TPM3-201ENST00000271850 ACIN1Q9UKV3 1341 aaKnown RBP13.22□□□□□ -0.29
TPM3-201ENST00000271850 VPS72Q15906 364 aa13.22□□□□□ -0.29
TPM3-201ENST00000271850 DCAF11Q8TEB1 546 aa13.22□□□□□ -0.29
TPM3-201ENST00000271850 POGKQ9P215 609 aa13.22□□□□□ -0.29
TPM3-201ENST00000271850 ARHGEF10O15013 1369 aa13.21□□□□□ -0.29
TPM3-201ENST00000271850 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.29
TPM3-201ENST00000271850 PSME1Q06323 249 aa13.21□□□□□ -0.29
TPM3-201ENST00000271850 WASLO00401 505 aaPredicted RBP13.2□□□□□ -0.3
TPM3-201ENST00000271850 SEPT12Q8IYM1 358 aa13.2□□□□□ -0.3
TPM3-201ENST00000271850 ZNF579Q8NAF0 562 aaKnown RBP13.2□□□□□ -0.3
TPM3-201ENST00000271850 DEFB132Q7Z7B7 95 aa13.19□□□□□ -0.3
TPM3-201ENST00000271850 ZRANB1Q9UGI0 708 aa13.19□□□□□ -0.3
TPM3-201ENST00000271850 BLMP54132 1417 aaPredicted RBP13.19□□□□□ -0.3
TPM3-201ENST00000271850 TOPAZ1Q8N9V7 1692 aa13.18□□□□□ -0.3
TPM3-201ENST00000271850 HRCP23327 699 aa13.18□□□□□ -0.3
TPM3-201ENST00000271850 LMOD2Q6P5Q4 547 aa13.18□□□□□ -0.3
TPM3-201ENST00000271850 COL14A1Q05707 1796 aaKnown RBP13.17□□□□□ -0.3
TPM3-201ENST00000271850 CCDC125Q86Z20 511 aa13.16□□□□□ -0.3
TPM3-201ENST00000271850 THSD7AQ9UPZ6 1657 aa13.15□□□□□ -0.3
TPM3-201ENST00000271850 PHRF1Q9P1Y6 1649 aaKnown RBP13.15□□□□□ -0.3
TPM3-201ENST00000271850 HAP1P54257 671 aaPredicted RBP13.15□□□□□ -0.3
TPM3-201ENST00000271850 BTG4Q9NY30 223 aa13.15□□□□□ -0.3
TPM3-201ENST00000271850 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
TPM3-201ENST00000271850 NBPF1Q3BBV0 1214 aa13.14□□□□□ -0.31
TPM3-201ENST00000271850 NUDT16Q96DE0 195 aaKnown RBP13.14□□□□□ -0.31
TPM3-201ENST00000271850 EIF3AQ14152 1382 aaKnown RBP13.14□□□□□ -0.31
TPM3-201ENST00000271850 GPRASP1Q5JY77 1395 aa13.14□□□□□ -0.31
TPM3-201ENST00000271850 KIAA1210Q9ULL0 1709 aa13.13□□□□□ -0.31
TPM3-201ENST00000271850 POLR3AO14802 1390 aaPredicted RBP13.13□□□□□ -0.31
TPM3-201ENST00000271850 FAM98CQ17RN3 349 aaKnown RBP13.13□□□□□ -0.31
TPM3-201ENST00000271850 KRT27Q7Z3Y8 459 aa13.13□□□□□ -0.31
TPM3-201ENST00000271850 SPATA31A5Q5VU36 1347 aa13.13□□□□□ -0.31
TPM3-201ENST00000271850 SPATA31A7Q8IWB4 1347 aa13.13□□□□□ -0.31
TPM3-201ENST00000271850 STAC3Q96MF2 364 aa13.12□□□□□ -0.31
TPM3-201ENST00000271850 CDK19Q9BWU1 502 aa13.12□□□□□ -0.31
TPM3-201ENST00000271850 CCDC9Q9Y3X0 531 aaKnown RBP13.12□□□□□ -0.31
TPM3-201ENST00000271850 NRKQ7Z2Y5 1582 aa13.11□□□□□ -0.31
TPM3-201ENST00000271850 KIAA0232Q92628 1395 aa13.11□□□□□ -0.31
TPM3-201ENST00000271850 FAM182BQ5T319 152 aa13.11□□□□□ -0.31
TPM3-201ENST00000271850 NGDNQ8NEJ9 315 aaKnown RBP13.11□□□□□ -0.31
TPM3-201ENST00000271850 CREBZFQ9NS37 354 aa13.11□□□□□ -0.31
TPM3-201ENST00000271850 TNS1Q9HBL0 1735 aaKnown RBP13.1□□□□□ -0.31
TPM3-201ENST00000271850 LMO7Q8WWI1 1683 aa13.09□□□□□ -0.31
TPM3-201ENST00000271850 PAK3O75914 559 aaPredicted RBP13.09□□□□□ -0.31
TPM3-201ENST00000271850 CHRNA2Q15822 529 aa13.09□□□□□ -0.31
TPM3-201ENST00000271850 NUTM2GQ5VZR2 741 aa13.09□□□□□ -0.31
TPM3-201ENST00000271850 ACEP12821 1306 aa13.09□□□□□ -0.31
TPM3-201ENST00000271850 PLEKHG3A1L390 1219 aa13.08□□□□□ -0.32
TPM3-201ENST00000271850 PRDM11Q9NQV5 511 aa13.08□□□□□ -0.32
TPM3-201ENST00000271850 CAMTA1Q9Y6Y1 1673 aa13.08□□□□□ -0.32
TPM3-201ENST00000271850 SPATA31A1Q5TZJ5 1347 aa13.08□□□□□ -0.32
TPM3-201ENST00000271850 NBPF8Q3BBV2 869 aa13.07□□□□□ -0.32
TPM3-201ENST00000271850 USP19O94966 1318 aa13.07□□□□□ -0.32
TPM3-201ENST00000271850 ZC3H6P61129 1189 aaKnown RBP13.06□□□□□ -0.32
TPM3-201ENST00000271850 PLSCR2Q9NRY7 297 aa13.06□□□□□ -0.32
TPM3-201ENST00000271850 CCDC61Q9Y6R9 512 aa13.06□□□□□ -0.32
TPM3-201ENST00000271850 LRP5O75197 1615 aa13.06□□□□□ -0.32
TPM3-201ENST00000271850 DISP2A7MBM2 1401 aa13.05□□□□□ -0.32
TPM3-201ENST00000271850 RGPD1P0DJD0 1748 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms