RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 PNPLA6Q8IY17 1366 aa21.92■■□□□ 1.1
CCDC40-201ENST00000269318 ITSN1Q15811 1721 aa21.91■■□□□ 1.1
CCDC40-201ENST00000269318 PHF23Q9BUL5 403 aaPredicted RBP21.88■■□□□ 1.09
CCDC40-201ENST00000269318 SPINK5Q9NQ38 1064 aaPredicted RBP21.88■■□□□ 1.09
CCDC40-201ENST00000269318 PIK3R4Q99570 1358 aa21.88■■□□□ 1.09
CCDC40-201ENST00000269318 ZNF692Q9BU19 519 aaPredicted RBP21.88■■□□□ 1.09
CCDC40-201ENST00000269318 B4GALNT3Q6L9W6 998 aa21.87■■□□□ 1.09
CCDC40-201ENST00000269318 WWC1Q8IX03 1113 aa21.87■■□□□ 1.09
CCDC40-201ENST00000269318 TCP11L2Q8N4U5 519 aa21.87■■□□□ 1.09
CCDC40-201ENST00000269318 U2AF1L5P0DN76 240 aaPredicted RBP21.87■■□□□ 1.09
CCDC40-201ENST00000269318 U2AF1Q01081 240 aaKnown RBP eCLIP21.87■■□□□ 1.09
CCDC40-201ENST00000269318 NME9Q86XW9 330 aa21.87■■□□□ 1.09
CCDC40-201ENST00000269318 DMRT2Q9Y5R5 561 aa21.87■■□□□ 1.09
CCDC40-201ENST00000269318 NRKQ7Z2Y5 1582 aa21.86■■□□□ 1.09
CCDC40-201ENST00000269318 PLEKHG3A1L390 1219 aa21.86■■□□□ 1.09
CCDC40-201ENST00000269318 E9PSI1 815 aa21.86■■□□□ 1.09
CCDC40-201ENST00000269318 NCBP3Q53F19 620 aaKnown RBP21.86■■□□□ 1.09
CCDC40-201ENST00000269318 TSHZ2Q9NRE2 1034 aa21.86■■□□□ 1.09
CCDC40-201ENST00000269318 NKTRP30414 1462 aaKnown RBP21.85■■□□□ 1.09
CCDC40-201ENST00000269318 POLKQ9UBT6 870 aa21.85■■□□□ 1.09
CCDC40-201ENST00000269318 CCDC27Q2M243 656 aa21.83■■□□□ 1.09
CCDC40-201ENST00000269318 AATKQ6ZMQ8 1374 aa21.83■■□□□ 1.09
CCDC40-201ENST00000269318 SETD1BQ9UPS6 1966 aaKnown RBP21.82■■□□□ 1.08
CCDC40-201ENST00000269318 ANKLE2Q86XL3 938 aa21.82■■□□□ 1.08
CCDC40-201ENST00000269318 PLEKHF1Q96S99 279 aa21.82■■□□□ 1.08
CCDC40-201ENST00000269318 ZRANB1Q9UGI0 708 aa21.82■■□□□ 1.08
CCDC40-201ENST00000269318 ACEP12821 1306 aa21.82■■□□□ 1.08
CCDC40-201ENST00000269318 DIAPH1O60610 1272 aaKnown RBP21.81■■□□□ 1.08
CCDC40-201ENST00000269318 RRP7AQ9Y3A4 280 aaKnown RBP21.81■■□□□ 1.08
CCDC40-201ENST00000269318 KCNA6P17658 529 aa21.81■■□□□ 1.08
CCDC40-201ENST00000269318 FBLN1P23142 703 aa21.81■■□□□ 1.08
CCDC40-201ENST00000269318 MAP2P11137 1827 aaKnown RBP21.8■■□□□ 1.08
CCDC40-201ENST00000269318 U2SURPO15042 1029 aaKnown RBP21.8■■□□□ 1.08
CCDC40-201ENST00000269318 USP6P35125 1406 aa21.8■■□□□ 1.08
CCDC40-201ENST00000269318 NUTM2FA1L443 756 aa21.79■■□□□ 1.08
CCDC40-201ENST00000269318 NEUROD2Q15784 382 aa21.79■■□□□ 1.08
CCDC40-201ENST00000269318 COG3Q96JB2 828 aa21.79■■□□□ 1.08
CCDC40-201ENST00000269318 TTC21BQ7Z4L5 1316 aa21.79■■□□□ 1.08
CCDC40-201ENST00000269318 CDK12Q9NYV4 1490 aaPredicted RBP21.79■■□□□ 1.08
CCDC40-201ENST00000269318 SSH2Q76I76 1423 aa21.78■■□□□ 1.08
CCDC40-201ENST00000269318 PLIN1O60240 522 aa21.78■■□□□ 1.08
CCDC40-201ENST00000269318 WDR63Q8IWG1 891 aa21.78■■□□□ 1.08
CCDC40-201ENST00000269318 EXOC6Q8TAG9 804 aa21.78■■□□□ 1.08
CCDC40-201ENST00000269318 CHD2O14647 1828 aaKnown RBP21.77■■□□□ 1.08
CCDC40-201ENST00000269318 EMILIN1Q9Y6C2 1016 aa21.76■■□□□ 1.07
CCDC40-201ENST00000269318 CCDC136Q96JN2 1154 aa21.76■■□□□ 1.07
CCDC40-201ENST00000269318 OVOS2A0A0J9YW53 1432 aa21.75■■□□□ 1.07
CCDC40-201ENST00000269318 OVOS2Q6IE36 1432 aa21.75■■□□□ 1.07
CCDC40-201ENST00000269318 ANKARQ7Z5J8 1434 aa21.75■■□□□ 1.07
CCDC40-201ENST00000269318 PPM1GO15355 546 aaPredicted RBP21.74■■□□□ 1.07
CCDC40-201ENST00000269318 RGPD8O14715 1765 aaPredicted RBP21.73■■□□□ 1.07
CCDC40-201ENST00000269318 LRRC7Q96NW7 1537 aa21.73■■□□□ 1.07
CCDC40-201ENST00000269318 FMN2Q9NZ56 1722 aa21.73■■□□□ 1.07
CCDC40-201ENST00000269318 NALCNQ8IZF0 1738 aa21.73■■□□□ 1.07
CCDC40-201ENST00000269318 TMPOP42166 694 aaKnown RBP21.72■■□□□ 1.07
CCDC40-201ENST00000269318 FCHSD2O94868 740 aa21.72■■□□□ 1.07
CCDC40-201ENST00000269318 IL13P35225 146 aa21.71■■□□□ 1.07
CCDC40-201ENST00000269318 PNNQ9H307 717 aaKnown RBP21.71■■□□□ 1.07
CCDC40-201ENST00000269318 MAPK8IP3Q9UPT6 1336 aa21.71■■□□□ 1.07
CCDC40-201ENST00000269318 RSPH6AQ9H0K4 717 aa21.7■■□□□ 1.07
CCDC40-201ENST00000269318 NPHP4O75161 1426 aaPredicted RBP21.7■■□□□ 1.06
CCDC40-201ENST00000269318 C20orf194Q5TEA3 1177 aa21.7■■□□□ 1.06
CCDC40-201ENST00000269318 USP31Q70CQ4 1352 aa21.69■■□□□ 1.06
CCDC40-201ENST00000269318 TTC21AQ8NDW8 1320 aa21.69■■□□□ 1.06
CCDC40-201ENST00000269318 RRS1Q15050 365 aaKnown RBP21.69■■□□□ 1.06
CCDC40-201ENST00000269318 PMFBP1Q8TBY8 1022 aa21.69■■□□□ 1.06
CCDC40-201ENST00000269318 CRBNQ96SW2 442 aa21.69■■□□□ 1.06
CCDC40-201ENST00000269318 TRIM35Q9UPQ4 493 aa21.69■■□□□ 1.06
CCDC40-201ENST00000269318 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.68■■□□□ 1.06
CCDC40-201ENST00000269318 BCAR3O75815 825 aa21.65■■□□□ 1.06
CCDC40-201ENST00000269318 NGDNQ8NEJ9 315 aaKnown RBP21.65■■□□□ 1.06
CCDC40-201ENST00000269318 PRKAR2BP31323 418 aa21.65■■□□□ 1.06
CCDC40-201ENST00000269318 MYH16Q9H6N6 1097 aa21.65■■□□□ 1.06
CCDC40-201ENST00000269318 PIK3C2AO00443 1686 aa21.63■■□□□ 1.05
CCDC40-201ENST00000269318 RIPK4P57078 832 aa21.63■■□□□ 1.05
CCDC40-201ENST00000269318 PEAK1Q9H792 1746 aa21.62■■□□□ 1.05
CCDC40-201ENST00000269318 IL16Q14005 1332 aa21.62■■□□□ 1.05
CCDC40-201ENST00000269318 ADGRL3Q9HAR2 1447 aa21.62■■□□□ 1.05
CCDC40-201ENST00000269318 HMOX1P09601 288 aa21.61■■□□□ 1.05
CCDC40-201ENST00000269318 NWD1Q149M9 1564 aa21.61■■□□□ 1.05
CCDC40-201ENST00000269318 PHACTR3Q96KR7 559 aa21.6■■□□□ 1.05
CCDC40-201ENST00000269318 RARSP54136 660 aaKnown RBP21.59■■□□□ 1.05
CCDC40-201ENST00000269318 FANCIQ9NVI1 1328 aa21.59■■□□□ 1.05
CCDC40-201ENST00000269318 USP54Q70EL1 1684 aa21.58■■□□□ 1.05
CCDC40-201ENST00000269318 NFE2L2Q16236 605 aa21.58■■□□□ 1.05
CCDC40-201ENST00000269318 NEFMP07197 916 aa21.57■■□□□ 1.04
CCDC40-201ENST00000269318 EIF4A2Q14240 407 aaKnown RBP21.57■■□□□ 1.04
CCDC40-201ENST00000269318 RBM33Q96EV2 1170 aaKnown RBP21.57■■□□□ 1.04
CCDC40-201ENST00000269318 MARF1Q9Y4F3 1742 aaKnown RBP21.57■■□□□ 1.04
CCDC40-201ENST00000269318 RBM19Q9Y4C8 960 aaKnown RBP21.56■■□□□ 1.04
CCDC40-201ENST00000269318 RGPD1P0DJD0 1748 aa21.56■■□□□ 1.04
CCDC40-201ENST00000269318 CT47B1P0C2W7 299 aaPredicted RBP21.56■■□□□ 1.04
CCDC40-201ENST00000269318 TSR2Q969E8 191 aaKnown RBP21.56■■□□□ 1.04
CCDC40-201ENST00000269318 MAP3K19Q56UN5 1328 aa21.55■■□□□ 1.04
CCDC40-201ENST00000269318 PDE3AQ14432 1141 aa21.55■■□□□ 1.04
CCDC40-201ENST00000269318 PHF8Q9UPP1 1060 aa21.54■■□□□ 1.04
CCDC40-201ENST00000269318 HSP90AB2PQ58FF8 381 aa21.54■■□□□ 1.04
CCDC40-201ENST00000269318 SBNO1A3KN83 1393 aa21.53■■□□□ 1.04
CCDC40-201ENST00000269318 FLT4P35916 1363 aa21.51■■□□□ 1.03
CCDC40-201ENST00000269318 NLRP6P59044 892 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms