RNA–Protein interactions for RNA: ENST00000254941.6

NIP7-202, Transcript of NIP7, nucleolar pre-rRNA processing protein, humanhuman

TSL 1 (best) BASIC

Gene NIP7, Length 1,887 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7-202ENST00000254941 POLR3AO14802 1390 aaPredicted RBP12.74□□□□□ -0.37
NIP7-202ENST00000254941 CNKSR2Q8WXI2 1034 aa12.74□□□□□ -0.37
NIP7-202ENST00000254941 NCOA3Q9Y6Q9 1424 aa12.74□□□□□ -0.37
NIP7-202ENST00000254941 XIRP1Q702N8 1843 aaKnown RBP12.74□□□□□ -0.37
NIP7-202ENST00000254941 GGNBP2Q9H3C7 697 aa12.73□□□□□ -0.37
NIP7-202ENST00000254941 USP6P35125 1406 aa12.73□□□□□ -0.37
NIP7-202ENST00000254941 C14orf37Q86TY3 774 aa12.72□□□□□ -0.37
NIP7-202ENST00000254941 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.72□□□□□ -0.37
NIP7-202ENST00000254941 MAP2P11137 1827 aaKnown RBP12.72□□□□□ -0.37
NIP7-202ENST00000254941 SSH2Q76I76 1423 aa12.72□□□□□ -0.37
NIP7-202ENST00000254941 C19orf44Q9H6X5 657 aa12.72□□□□□ -0.37
NIP7-202ENST00000254941 TMEM94Q12767 1356 aa12.71□□□□□ -0.37
NIP7-202ENST00000254941 PMFBP1Q8TBY8 1022 aa12.71□□□□□ -0.37
NIP7-202ENST00000254941 DCCP43146 1447 aa12.7□□□□□ -0.38
NIP7-202ENST00000254941 TNNT2P45379 298 aaPredicted RBP12.7□□□□□ -0.38
NIP7-202ENST00000254941 HNRNPUQ00839 825 aaKnown RBP eCLIP12.7□□□□□ -0.38
NIP7-202ENST00000254941 INSRP06213 1382 aa12.7□□□□□ -0.38
NIP7-202ENST00000254941 NGDNQ8NEJ9 315 aaKnown RBP12.7□□□□□ -0.38
NIP7-202ENST00000254941 TTC21BQ7Z4L5 1316 aa12.69□□□□□ -0.38
NIP7-202ENST00000254941 NME9Q86XW9 330 aa12.69□□□□□ -0.38
NIP7-202ENST00000254941 MTHFSP49914 203 aa12.68□□□□□ -0.38
NIP7-202ENST00000254941 POTEHQ6S545 545 aa12.68□□□□□ -0.38
NIP7-202ENST00000254941 PHF8Q9UPP1 1060 aa12.68□□□□□ -0.38
NIP7-202ENST00000254941 SHPRHQ149N8 1683 aa12.68□□□□□ -0.38
NIP7-202ENST00000254941 TTC21AQ8NDW8 1320 aa12.67□□□□□ -0.38
NIP7-202ENST00000254941 LRRC7Q96NW7 1537 aa12.67□□□□□ -0.38
NIP7-202ENST00000254941 ZNF335Q9H4Z2 1342 aaPredicted RBP12.67□□□□□ -0.38
NIP7-202ENST00000254941 PIK3C2AO00443 1686 aa12.67□□□□□ -0.38
NIP7-202ENST00000254941 KIF1AQ12756 1690 aa12.67□□□□□ -0.38
NIP7-202ENST00000254941 ESCO1Q5FWF5 840 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 COG3Q96JB2 828 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 OVOS2A0A0J9YW53 1432 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 OVOS2Q6IE36 1432 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 USP54Q70EL1 1684 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 C1orf167Q5SNV9 1468 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 BLMP54132 1417 aaPredicted RBP12.66□□□□□ -0.38
NIP7-202ENST00000254941 AATKQ6ZMQ8 1374 aa12.66□□□□□ -0.38
NIP7-202ENST00000254941 ATF3P18847 181 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 WDR43Q15061 677 aaKnown RBP eCLIP12.65□□□□□ -0.38
NIP7-202ENST00000254941 ZRANB1Q9UGI0 708 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 MST1RQ04912 1400 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 MSH6P52701 1360 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 ZBED9Q6R2W3 1325 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 CFAP53Q96M91 514 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 ADAMTS8Q9UP79 889 aa12.65□□□□□ -0.38
NIP7-202ENST00000254941 MARF1Q9Y4F3 1742 aaKnown RBP12.65□□□□□ -0.39
NIP7-202ENST00000254941 CADPS2Q86UW7 1296 aa12.64□□□□□ -0.39
NIP7-202ENST00000254941 ORAI2Q96SN7 254 aa12.64□□□□□ -0.39
NIP7-202ENST00000254941 USP31Q70CQ4 1352 aa12.64□□□□□ -0.39
NIP7-202ENST00000254941 PNPLA6Q8IY17 1366 aa12.64□□□□□ -0.39
NIP7-202ENST00000254941 COL3A1P02461 1466 aaPredicted RBP12.63□□□□□ -0.39
NIP7-202ENST00000254941 SMG6Q86US8 1419 aaKnown RBP12.63□□□□□ -0.39
NIP7-202ENST00000254941 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
NIP7-202ENST00000254941 TRPM3Q9HCF6 1732 aaPredicted RBP12.62□□□□□ -0.39
NIP7-202ENST00000254941 FBLN1P23142 703 aa12.61□□□□□ -0.39
NIP7-202ENST00000254941 PSME1Q06323 249 aa12.61□□□□□ -0.39
NIP7-202ENST00000254941 CDK12Q9NYV4 1490 aaPredicted RBP12.6□□□□□ -0.39
NIP7-202ENST00000254941 FOXO3O43524 673 aa12.6□□□□□ -0.39
NIP7-202ENST00000254941 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
NIP7-202ENST00000254941 ABTB2Q8N961 1025 aa12.59□□□□□ -0.39
NIP7-202ENST00000254941 NLRP6P59044 892 aa12.58□□□□□ -0.4
NIP7-202ENST00000254941 EMILIN1Q9Y6C2 1016 aa12.58□□□□□ -0.4
NIP7-202ENST00000254941 RRS1Q15050 365 aaKnown RBP12.57□□□□□ -0.4
NIP7-202ENST00000254941 NUDCQ9Y266 331 aa12.57□□□□□ -0.4
NIP7-202ENST00000254941 PEAK1Q9H792 1746 aa12.57□□□□□ -0.4
NIP7-202ENST00000254941 ALS2Q96Q42 1657 aa12.57□□□□□ -0.4
NIP7-202ENST00000254941 PPM1GO15355 546 aaPredicted RBP12.57□□□□□ -0.4
NIP7-202ENST00000254941 DIAPH1O60610 1272 aaKnown RBP12.57□□□□□ -0.4
NIP7-202ENST00000254941 KRT28Q7Z3Y7 464 aa12.56□□□□□ -0.4
NIP7-202ENST00000254941 LTBP4Q8N2S1 1624 aa12.55□□□□□ -0.4
NIP7-202ENST00000254941 LTN1O94822 1766 aa12.55□□□□□ -0.4
NIP7-202ENST00000254941 NPHP3Q7Z494 1330 aa12.55□□□□□ -0.4
NIP7-202ENST00000254941 U2AF1L5P0DN76 240 aaPredicted RBP12.55□□□□□ -0.4
NIP7-202ENST00000254941 U2AF1Q01081 240 aaKnown RBP eCLIP12.55□□□□□ -0.4
NIP7-202ENST00000254941 NUTM2GQ5VZR2 741 aa12.55□□□□□ -0.4
NIP7-202ENST00000254941 SLAIN2Q9P270 581 aa12.55□□□□□ -0.4
NIP7-202ENST00000254941 SENP3-EIF4A1A0A087X0R7 540 aa12.54□□□□□ -0.4
NIP7-202ENST00000254941 XPCQ01831 940 aaPredicted RBP12.54□□□□□ -0.4
NIP7-202ENST00000254941 CCDC146Q8IYE0 955 aa12.54□□□□□ -0.4
NIP7-202ENST00000254941 KIF24Q5T7B8 1368 aa12.54□□□□□ -0.4
NIP7-202ENST00000254941 BRINP3Q76B58 766 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 NGEFQ8N5V2 710 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 MAP3K19Q56UN5 1328 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 NFAT5O94916 1531 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 PHRF1Q9P1Y6 1649 aaKnown RBP12.53□□□□□ -0.4
NIP7-202ENST00000254941 PXDNQ92626 1479 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 APAF1O14727 1248 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
NIP7-202ENST00000254941 SOX12O15370 315 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 IL13P35225 146 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 RUNDC1Q96C34 613 aa12.53□□□□□ -0.4
NIP7-202ENST00000254941 SLIT3O75094 1523 aa12.52□□□□□ -0.4
NIP7-202ENST00000254941 SBNO1A3KN83 1393 aa12.52□□□□□ -0.4
NIP7-202ENST00000254941 SALL2Q9Y467 1007 aaPredicted RBP12.52□□□□□ -0.41
NIP7-202ENST00000254941 FLT4P35916 1363 aa12.52□□□□□ -0.41
NIP7-202ENST00000254941 IQSEC2Q5JU85 1478 aa12.51□□□□□ -0.41
NIP7-202ENST00000254941 PDE3BQ13370 1112 aa12.51□□□□□ -0.41
NIP7-202ENST00000254941 KCNH5Q8NCM2 988 aa12.51□□□□□ -0.41
NIP7-202ENST00000254941 RGPD1P0DJD0 1748 aa12.51□□□□□ -0.41
NIP7-202ENST00000254941 NHSL1Q5SYE7 1610 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms