RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 SPRYD3Q8NCJ5 442 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 SLC52A1Q9NWF4 448 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 RIMBP3CA6NJZ7 1639 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 RIMBP3BA6NNM3 1639 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 RIMBP3Q9UFD9 1639 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 MED14O60244 1454 aa13□□□□□ -0.33
COPB1-201ENST00000249923 PNPLA6Q8IY17 1366 aa13□□□□□ -0.33
COPB1-201ENST00000249923 TMPOP42166 694 aaKnown RBP13□□□□□ -0.33
COPB1-201ENST00000249923 CFAP53Q96M91 514 aa13□□□□□ -0.33
COPB1-201ENST00000249923 LRRC7Q96NW7 1537 aa12.99□□□□□ -0.33
COPB1-201ENST00000249923 PPM1GO15355 546 aaPredicted RBP12.99□□□□□ -0.33
COPB1-201ENST00000249923 EXOSC9Q06265 439 aaKnown RBP12.98□□□□□ -0.33
COPB1-201ENST00000249923 NCBP3Q53F19 620 aaKnown RBP12.98□□□□□ -0.33
COPB1-201ENST00000249923 PDZRN3Q9UPQ7 1066 aa12.98□□□□□ -0.33
COPB1-201ENST00000249923 TRIM27P14373 513 aa12.98□□□□□ -0.33
COPB1-201ENST00000249923 MVPQ14764 893 aaKnown RBP12.98□□□□□ -0.33
COPB1-201ENST00000249923 NRXN3Q9Y4C0 1643 aa12.97□□□□□ -0.33
COPB1-201ENST00000249923 U2SURPO15042 1029 aaKnown RBP12.97□□□□□ -0.33
COPB1-201ENST00000249923 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
COPB1-201ENST00000249923 SSH1Q8WYL5 1049 aa12.97□□□□□ -0.33
COPB1-201ENST00000249923 CABP1Q9NZU7 370 aa12.97□□□□□ -0.33
COPB1-201ENST00000249923 ATAD2Q6PL18 1390 aa12.97□□□□□ -0.33
COPB1-201ENST00000249923 MAPK8IP3Q9UPT6 1336 aa12.96□□□□□ -0.33
COPB1-201ENST00000249923 CDK19Q9BWU1 502 aa12.96□□□□□ -0.33
COPB1-201ENST00000249923 MYH16Q9H6N6 1097 aa12.96□□□□□ -0.33
COPB1-201ENST00000249923 FRAT2O75474 233 aaPredicted RBP12.96□□□□□ -0.33
COPB1-201ENST00000249923 WAPLQ7Z5K2 1190 aa12.96□□□□□ -0.34
COPB1-201ENST00000249923 SLKQ9H2G2 1235 aaPredicted RBP12.96□□□□□ -0.34
COPB1-201ENST00000249923 A2ML1A8K2U0 1454 aa12.95□□□□□ -0.34
COPB1-201ENST00000249923 MAP2P11137 1827 aaKnown RBP12.94□□□□□ -0.34
COPB1-201ENST00000249923 DIP2BQ9P265 1576 aa12.94□□□□□ -0.34
COPB1-201ENST00000249923 TSPOAP1O95153 1857 aa12.94□□□□□ -0.34
COPB1-201ENST00000249923 ZKSCAN2Q63HK3 967 aa12.93□□□□□ -0.34
COPB1-201ENST00000249923 DZIP1LQ8IYY4 767 aaKnown RBP12.93□□□□□ -0.34
COPB1-201ENST00000249923 PMFBP1Q8TBY8 1022 aa12.93□□□□□ -0.34
COPB1-201ENST00000249923 FAM135BQ49AJ0 1406 aa12.93□□□□□ -0.34
COPB1-201ENST00000249923 SPATA31D1Q6ZQQ2 1576 aa12.93□□□□□ -0.34
COPB1-201ENST00000249923 POGKQ9P215 609 aa12.93□□□□□ -0.34
COPB1-201ENST00000249923 PHACTR3Q96KR7 559 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 SMC4Q9NTJ3 1288 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 POLKQ9UBT6 870 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 NOB1Q9ULX3 412 aaKnown RBP12.92□□□□□ -0.34
COPB1-201ENST00000249923 RIPK4P57078 832 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 RSPH6AQ9H0K4 717 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 DLC1Q96QB1 1528 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 GZF1Q9H116 711 aaPredicted RBP12.92□□□□□ -0.34
COPB1-201ENST00000249923 TERF2IPQ9NYB0 399 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 NCKAP5LQ9HCH0 1330 aa12.92□□□□□ -0.34
COPB1-201ENST00000249923 ZMYM3Q14202 1370 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.91□□□□□ -0.34
COPB1-201ENST00000249923 TBC1D32Q96NH3 1257 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 ZRANB1Q9UGI0 708 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 TMEM57Q8N5G2 664 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 ANTXR1Q9H6X2 564 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 REREQ9P2R6 1566 aa12.91□□□□□ -0.34
COPB1-201ENST00000249923 DIAPH1O60610 1272 aaKnown RBP12.9□□□□□ -0.34
COPB1-201ENST00000249923 AAMPQ13685 434 aa12.9□□□□□ -0.34
COPB1-201ENST00000249923 CYB5RLQ6IPT4 315 aa12.9□□□□□ -0.34
COPB1-201ENST00000249923 ATF7IPQ6VMQ6 1270 aa12.9□□□□□ -0.34
COPB1-201ENST00000249923 THUMPD2Q9BTF0 503 aaKnown RBP12.9□□□□□ -0.34
COPB1-201ENST00000249923 GSE1Q14687 1217 aa12.9□□□□□ -0.34
COPB1-201ENST00000249923 CPSF1Q10570 1443 aaKnown RBP12.9□□□□□ -0.35
COPB1-201ENST00000249923 METP08581 1390 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 DLG5Q8TDM6 1919 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 IL16Q14005 1332 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 CPS1P31327 1500 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 ATP7BP35670 1465 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 CT47B1P0C2W7 299 aaPredicted RBP12.89□□□□□ -0.35
COPB1-201ENST00000249923 ZBTB40Q9NUA8 1239 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 EMILIN1Q9Y6C2 1016 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 AGLP35573 1532 aa12.89□□□□□ -0.35
COPB1-201ENST00000249923 FTSJ3Q8IY81 847 aaKnown RBP12.89□□□□□ -0.35
COPB1-201ENST00000249923 RWDD1Q9H446 243 aaPredicted RBP12.89□□□□□ -0.35
COPB1-201ENST00000249923 PRKAR2BP31323 418 aa12.88□□□□□ -0.35
COPB1-201ENST00000249923 RIMS2Q9UQ26 1411 aa12.88□□□□□ -0.35
COPB1-201ENST00000249923 HDAC1Q13547 482 aaPredicted RBP12.88□□□□□ -0.35
COPB1-201ENST00000249923 ITPRIPQ8IWB1 547 aa12.88□□□□□ -0.35
COPB1-201ENST00000249923 HMOX1P09601 288 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 TSPYL6Q8N831 410 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 TBC1D2Q9BYX2 928 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 MON2Q7Z3U7 1717 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 FAM69CQ0P6D2 419 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 NME9Q86XW9 330 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 PPIP5K1Q6PFW1 1433 aa12.87□□□□□ -0.35
COPB1-201ENST00000249923 HDGFL2Q7Z4V5 671 aaPredicted RBP12.86□□□□□ -0.35
COPB1-201ENST00000249923 SMC5Q8IY18 1101 aa12.86□□□□□ -0.35
COPB1-201ENST00000249923 C3P01024 1663 aa12.86□□□□□ -0.35
COPB1-201ENST00000249923 FCHSD2O94868 740 aa12.85□□□□□ -0.35
COPB1-201ENST00000249923 IL13P35225 146 aa12.85□□□□□ -0.35
COPB1-201ENST00000249923 KNDC1Q76NI1 1749 aa12.84□□□□□ -0.35
COPB1-201ENST00000249923 DDX19BQ9UMR2 479 aa12.84□□□□□ -0.35
COPB1-201ENST00000249923 NAP1L5Q96NT1 182 aaPredicted RBP12.84□□□□□ -0.35
COPB1-201ENST00000249923 AKAP12Q02952 1782 aa12.84□□□□□ -0.35
COPB1-201ENST00000249923 CDK12Q9NYV4 1490 aaPredicted RBP12.83□□□□□ -0.36
COPB1-201ENST00000249923 VAMP4O75379 141 aa12.83□□□□□ -0.36
COPB1-201ENST00000249923 MLECQ14165 292 aa12.83□□□□□ -0.36
COPB1-201ENST00000249923 EDC4Q6P2E9 1401 aaKnown RBP12.83□□□□□ -0.36
COPB1-201ENST00000249923 PRR36Q9H6K5 1346 aa12.82□□□□□ -0.36
COPB1-201ENST00000249923 WASLO00401 505 aaPredicted RBP12.82□□□□□ -0.36
COPB1-201ENST00000249923 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms