RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 MYOM3Q5VTT5 1437 aa15.86■□□□□ 0.13
COL1A1-201ENST00000225964 SDF4Q9BRK5 362 aa15.86■□□□□ 0.13
COL1A1-201ENST00000225964 C22orf23Q9BZE7 217 aa15.86■□□□□ 0.13
COL1A1-201ENST00000225964 ACBD3Q9H3P7 528 aa15.85■□□□□ 0.13
COL1A1-201ENST00000225964 BRPF1P55201 1214 aaPredicted RBP15.85■□□□□ 0.13
COL1A1-201ENST00000225964 CUX1P39880 1505 aa15.84■□□□□ 0.13
COL1A1-201ENST00000225964 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.83■□□□□ 0.13
COL1A1-201ENST00000225964 MYO6Q9UM54 1294 aa15.83■□□□□ 0.13
COL1A1-201ENST00000225964 SMC2O95347 1197 aa15.83■□□□□ 0.13
COL1A1-201ENST00000225964 MYL6BP14649 208 aa15.83■□□□□ 0.12
COL1A1-201ENST00000225964 ZHX3Q9H4I2 956 aa15.83■□□□□ 0.12
COL1A1-201ENST00000225964 ARGLU1Q9NWB6 273 aaPredicted RBP15.83■□□□□ 0.12
COL1A1-201ENST00000225964 GNAI3P08754 354 aa15.82■□□□□ 0.12
COL1A1-201ENST00000225964 HIP1O00291 1037 aa15.82■□□□□ 0.12
COL1A1-201ENST00000225964 SIL1Q9H173 461 aa15.82■□□□□ 0.12
COL1A1-201ENST00000225964 CNTLNQ9NXG0 1405 aa15.82■□□□□ 0.12
COL1A1-201ENST00000225964 MPHOSPH10O00566 681 aaKnown RBP15.82■□□□□ 0.12
COL1A1-201ENST00000225964 ERC1Q8IUD2 1116 aa15.82■□□□□ 0.12
COL1A1-201ENST00000225964 IBSPP21815 317 aaPredicted RBP15.82■□□□□ 0.12
COL1A1-201ENST00000225964 MTHFSP49914 203 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 CEBPZQ03701 1054 aaKnown RBP15.81■□□□□ 0.12
COL1A1-201ENST00000225964 C1orf115Q9H7X2 142 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 ZNF644Q9H582 1327 aaPredicted RBP15.81■□□□□ 0.12
COL1A1-201ENST00000225964 SMARCA4P51532 1647 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 FILIP1LQ4L180 1135 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 RRBP1Q9P2E9 1410 aaKnown RBP15.81■□□□□ 0.12
COL1A1-201ENST00000225964 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 SMARCE1Q969G3 411 aa15.81■□□□□ 0.12
COL1A1-201ENST00000225964 CCDC69A6NI79 296 aa15.8■□□□□ 0.12
COL1A1-201ENST00000225964 PRAM1Q96QH2 718 aa15.8■□□□□ 0.12
COL1A1-201ENST00000225964 MAP4K4O95819 1239 aaPredicted RBP15.8■□□□□ 0.12
COL1A1-201ENST00000225964 ZSCAN29Q8IWY8 852 aaPredicted RBP15.8■□□□□ 0.12
COL1A1-201ENST00000225964 MATR3P43243 847 aaKnown RBP eCLIP15.8■□□□□ 0.12
COL1A1-201ENST00000225964 PDCL3Q9H2J4 239 aa15.8■□□□□ 0.12
COL1A1-201ENST00000225964 SPG7Q9UQ90 795 aa15.8■□□□□ 0.12
COL1A1-201ENST00000225964 PRKAR2BP31323 418 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 ATAD2BQ9ULI0 1458 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 RSPH6AQ9H0K4 717 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 MPHOSPH8Q99549 860 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 STK3Q13188 491 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 HSP90B2PQ58FF3 399 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 BICDL1Q6ZP65 573 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 FAM13BQ9NYF5 915 aa15.79■□□□□ 0.12
COL1A1-201ENST00000225964 ZNF396Q96N95 335 aaPredicted RBP15.78■□□□□ 0.12
COL1A1-201ENST00000225964 GNAI2P04899 355 aa15.78■□□□□ 0.12
COL1A1-201ENST00000225964 KINO60870 393 aaKnown RBP15.78■□□□□ 0.12
COL1A1-201ENST00000225964 NUP133Q8WUM0 1156 aa15.78■□□□□ 0.12
COL1A1-201ENST00000225964 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
COL1A1-201ENST00000225964 RAD54L2Q9Y4B4 1467 aa15.78■□□□□ 0.12
COL1A1-201ENST00000225964 FMNL2Q96PY5 1086 aa15.78■□□□□ 0.12
COL1A1-201ENST00000225964 SOGA3Q5TF21 947 aa15.77■□□□□ 0.12
COL1A1-201ENST00000225964 TWISTNBQ3B726 338 aaPredicted RBP15.77■□□□□ 0.11
COL1A1-201ENST00000225964 NACAP1Q9BZK3 213 aa15.77■□□□□ 0.11
COL1A1-201ENST00000225964 SPINK5Q9NQ38 1064 aaPredicted RBP15.77■□□□□ 0.11
COL1A1-201ENST00000225964 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.11
COL1A1-201ENST00000225964 TANGO6Q9C0B7 1094 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 STK38Q15208 465 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 CDK19Q9BWU1 502 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 CCDC57Q2TAC2 916 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 HDGFL1Q5TGJ6 251 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 NEFHP12036 1026 aa15.76■□□□□ 0.11
COL1A1-201ENST00000225964 MAP7D2Q96T17 732 aa15.75■□□□□ 0.11
COL1A1-201ENST00000225964 TRIM5Q9C035 493 aa15.75■□□□□ 0.11
COL1A1-201ENST00000225964 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.75■□□□□ 0.11
COL1A1-201ENST00000225964 LETM1O95202 739 aaPredicted RBP15.75■□□□□ 0.11
COL1A1-201ENST00000225964 RNF214Q8ND24 703 aa15.75■□□□□ 0.11
COL1A1-201ENST00000225964 NOB1Q9ULX3 412 aaKnown RBP15.75■□□□□ 0.11
COL1A1-201ENST00000225964 DCTN1Q14203 1278 aa15.75■□□□□ 0.11
COL1A1-201ENST00000225964 ZNF530Q6P9A1 599 aaPredicted RBP15.75■□□□□ 0.11
COL1A1-201ENST00000225964 SLC4A2P04920 1241 aa15.74■□□□□ 0.11
COL1A1-201ENST00000225964 FKBP4Q02790 459 aaKnown RBP eCLIP15.74■□□□□ 0.11
COL1A1-201ENST00000225964 CCDC39Q9UFE4 941 aa15.74■□□□□ 0.11
COL1A1-201ENST00000225964 EXOSC9Q06265 439 aaKnown RBP15.74■□□□□ 0.11
COL1A1-201ENST00000225964 KIF7Q2M1P5 1343 aa15.74■□□□□ 0.11
COL1A1-201ENST00000225964 THEMISQ8N1K5 641 aaPredicted RBP15.74■□□□□ 0.11
COL1A1-201ENST00000225964 CCDC7Q96M83 1385 aa15.74■□□□□ 0.11
COL1A1-201ENST00000225964 CFAP70Q5T0N1 1121 aa15.74■□□□□ 0.11
COL1A1-201ENST00000225964 SULT6B1Q6IMI4 303 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 ADAMTS8Q9UP79 889 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 TRIM22Q8IYM9 498 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 NEK4P51957 841 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 ERCC4Q92889 916 aaPredicted RBP15.73■□□□□ 0.11
COL1A1-201ENST00000225964 ZNF76P36508 570 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 ANKRD62A6NC57 917 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 TCP11L2Q8N4U5 519 aa15.73■□□□□ 0.11
COL1A1-201ENST00000225964 ANKRD50Q9ULJ7 1429 aa15.72■□□□□ 0.11
COL1A1-201ENST00000225964 ZSCAN25Q6NSZ9 544 aa15.72■□□□□ 0.11
COL1A1-201ENST00000225964 STAC3Q96MF2 364 aa15.72■□□□□ 0.11
COL1A1-201ENST00000225964 SEPT11Q9NVA2 429 aaKnown RBP15.72■□□□□ 0.11
COL1A1-201ENST00000225964 XPCQ01831 940 aaPredicted RBP15.72■□□□□ 0.11
COL1A1-201ENST00000225964 AQRO60306 1485 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL1A1-201ENST00000225964 DEF6Q9H4E7 631 aa15.72■□□□□ 0.11
COL1A1-201ENST00000225964 PIBF1Q8WXW3 757 aa15.72■□□□□ 0.11
COL1A1-201ENST00000225964 ZNHIT6Q9NWK9 470 aaKnown RBP15.72■□□□□ 0.11
COL1A1-201ENST00000225964 PIP4K2AP48426 406 aaPredicted RBP15.71■□□□□ 0.11
COL1A1-201ENST00000225964 NOM1Q5C9Z4 860 aaKnown RBP15.71■□□□□ 0.11
COL1A1-201ENST00000225964 RAI14Q9P0K7 980 aa15.71■□□□□ 0.11
COL1A1-201ENST00000225964 STIM1Q13586 685 aa15.71■□□□□ 0.11
COL1A1-201ENST00000225964 PNISRQ8TF01 805 aaKnown RBP15.71■□□□□ 0.11
COL1A1-201ENST00000225964 TSPY26PQ9H489 355 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms