RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 THAP2Q9H0W7 228 aa11.02□□□□□ -0.65
UBR4-208ENST00000459947 MAGEH1Q9H213 219 aa11.02□□□□□ -0.65
UBR4-208ENST00000459947 HAUS2Q9NVX0 235 aa11.02□□□□□ -0.65
UBR4-208ENST00000459947 TMEM248Q9NWD8 314 aa11.02□□□□□ -0.65
UBR4-208ENST00000459947 OR12D3Q9UGF7 316 aa11.02□□□□□ -0.65
UBR4-208ENST00000459947 TPX2Q9ULW0 747 aaKnown RBP11.02□□□□□ -0.65
UBR4-208ENST00000459947 EPN1Q9Y6I3 576 aaPredicted RBP11.02□□□□□ -0.65
UBR4-208ENST00000459947 BTNL10A8MVZ5 291 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 PI15O43692 258 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 MRE11P49959 708 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ZBTB16Q05516 673 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ENPP2Q13822 863 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 PITRM1Q5JRX3 1037 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 MANEALQ5VSG8 457 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 RETSATQ6NUM9 610 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 DCAF4L2Q8NA75 395 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 NELL1Q92832 810 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ABCB8Q9NUT2 735 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 SCML1Q9UN30 329 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 AP4E1Q9UPM8 1137 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 GOLGA6L7A0A1B0GV03 622 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 AP5Z1O43299 807 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 TPI1P60174 286 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 RPL7AP62424 266 aaKnown RBP11.01□□□□□ -0.65
UBR4-208ENST00000459947 RPS24P62847 133 aaKnown RBP11.01□□□□□ -0.65
UBR4-208ENST00000459947 PLEKHG6Q3KR16 790 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ATRIPQ8WXE1 791 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 SPACA7Q96KW9 195 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 TSGA10Q9BZW7 698 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 CIPCQ9C0C6 399 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ZWILCHQ9H900 591 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 HPCAL4Q9UM19 191 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ZNF487B1APH4 448 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 ZNF189O75820 626 aaPredicted RBP11.01□□□□□ -0.65
UBR4-208ENST00000459947 HOXB2P14652 356 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 CSTF1Q05048 431 aaKnown RBP11.01□□□□□ -0.65
UBR4-208ENST00000459947 CCDC15Q0P6D6 951 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 LMAN2Q12907 356 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 PDK2Q15119 407 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 LRRC38Q5VT99 294 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 POLNQ7Z5Q5 900 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 DSG4Q86SJ6 1040 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 CHPFQ8IZ52 775 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 RAB23Q9ULC3 237 aa11.01□□□□□ -0.65
UBR4-208ENST00000459947 FARP1Q9Y4F1 1045 aaPredicted RBP11.01□□□□□ -0.65
UBR4-208ENST00000459947 ALOX15BO15296 676 aa11□□□□□ -0.65
UBR4-208ENST00000459947 SP9P0CG40 484 aa11□□□□□ -0.65
UBR4-208ENST00000459947 TIE1P35590 1138 aa11□□□□□ -0.65
UBR4-208ENST00000459947 FNDC3BQ53EP0 1204 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 PHLDB2Q86SQ0 1253 aa11□□□□□ -0.65
UBR4-208ENST00000459947 LRRC49Q8IUZ0 686 aa11□□□□□ -0.65
UBR4-208ENST00000459947 ZNF683Q8IZ20 524 aa11□□□□□ -0.65
UBR4-208ENST00000459947 GRPEL1Q9HAV7 217 aa11□□□□□ -0.65
UBR4-208ENST00000459947 DDX56Q9NY93 547 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 PLK2Q9NYY3 685 aa11□□□□□ -0.65
UBR4-208ENST00000459947 USP18Q9UMW8 372 aa11□□□□□ -0.65
UBR4-208ENST00000459947 EDDM13A0A1B0GTR0 161 aa11□□□□□ -0.65
UBR4-208ENST00000459947 RNASEH1O60930 286 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 ZNF217O75362 1048 aa11□□□□□ -0.65
UBR4-208ENST00000459947 NDUFA10O95299 355 aa11□□□□□ -0.65
UBR4-208ENST00000459947 SERPINB6P35237 376 aa11□□□□□ -0.65
UBR4-208ENST00000459947 PARP15Q460N3 678 aa11□□□□□ -0.65
UBR4-208ENST00000459947 RTL3Q8N8U3 475 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 ATOH1Q92858 354 aaPredicted RBP11□□□□□ -0.65
UBR4-208ENST00000459947 LMLNQ96KR4 655 aa11□□□□□ -0.65
UBR4-208ENST00000459947 CHP1Q99653 195 aa11□□□□□ -0.65
UBR4-208ENST00000459947 MUC3BQ9H195 1237 aa11□□□□□ -0.65
UBR4-208ENST00000459947 RBM12Q9NTZ6 932 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 STON1Q9Y6Q2 735 aa11□□□□□ -0.65
UBR4-208ENST00000459947 EEF2KO00418 725 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 AXIN1O15169 862 aa11□□□□□ -0.65
UBR4-208ENST00000459947 MIPP30301 263 aa11□□□□□ -0.65
UBR4-208ENST00000459947 HLA-FP30511 346 aa11□□□□□ -0.65
UBR4-208ENST00000459947 SERPINA13PQ6UXR4 307 aa11□□□□□ -0.65
UBR4-208ENST00000459947 SLC36A4Q6YBV0 504 aa11□□□□□ -0.65
UBR4-208ENST00000459947 IL17RCQ8NAC3 791 aa11□□□□□ -0.65
UBR4-208ENST00000459947 TXNDC5Q8NBS9 432 aaKnown RBP11□□□□□ -0.65
UBR4-208ENST00000459947 LAMA3Q16787 3333 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 DAPK3O43293 454 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 ATMINO43313 823 aaPredicted RBP10.99□□□□□ -0.65
UBR4-208ENST00000459947 FOXD2O60548 495 aaPredicted RBP10.99□□□□□ -0.65
UBR4-208ENST00000459947 COL9A1P20849 921 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 NDST2P52849 883 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 SEC13P55735 322 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 ECT2LQ008S8 904 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 CRY1Q16526 586 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 USP39Q53GS9 565 aaKnown RBP10.99□□□□□ -0.65
UBR4-208ENST00000459947 ODF2Q5BJF6 829 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 KIAA1328Q86T90 577 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 CEP44Q9C0F1 390 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 PCED1AQ9H1Q7 454 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 VPS28Q9UK41 221 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 ERVW-1Q9UQF0 538 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 PCDHA13Q9Y5I0 950 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 TTC28Q96AY4 2481 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 C7P10643 843 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 OXTRP30559 389 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 OR1E1P30953 314 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 CETN2P41208 172 aa10.99□□□□□ -0.65
UBR4-208ENST00000459947 CSKP41240 450 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms