RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NCF1BA6NI72 391 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 NCF1CA8MVU1 366 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TMX2-CTNND1H3BSU7 103 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 ZBTB14O43829 449 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 PLA2G6O60733 806 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 RTN2O75298 545 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 RPP40O75818 363 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 NCF1P14598 390 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 SF3A3Q12874 501 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 DGLUCYQ7Z3D6 616 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 CBWD2Q8IUF1 395 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 LRRN4CLQ8ND94 238 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 POPDC2Q9HBU9 364 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 EPN1Q9Y6I3 576 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TMEM150BA6NC51 233 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 DCXO43602 365 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 GLP2RO95838 553 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 ALPIP09923 528 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 RASSF2P50749 326 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 ACAD11Q709F0 780 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM136AQ96C01 138 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 RNF112Q9ULX5 631 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 CNTNAP5Q8WYK1 1306 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 PIPSLA2A3N6 862 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 A6NNZ2 444 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 MYO1GB0I1T2 1018 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 FOXD2O60548 495 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ITGA3P26006 1051 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ALDH6A1Q02252 535 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 IRF5Q13568 498 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 SHHQ15465 462 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 TUBB8Q3ZCM7 444 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ZC3H12AQ5D1E8 599 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 PIK3R6Q5UE93 754 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 B4GALNT4Q76KP1 1039 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 REPS1Q96D71 796 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 GSDMCQ9BYG8 508 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 BCAS3Q9H6U6 928 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 MRTO4Q9UKD2 239 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 A8MUI8 341 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 MIF4GDA9UHW6 222 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 GTPBP1O00178 669 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 COPEO14579 308 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC37A4O43826 429 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 TCF3P15923 654 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 KDM7AQ6ZMT4 941 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 TEX19Q8NA77 164 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 MLPHQ9BV36 600 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 AP4E1Q9UPM8 1137 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ASF1AQ9Y294 204 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 DUSP10Q9Y6W6 482 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 PTPN9P43378 593 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC16A1P53985 500 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ELOCQ15369 112 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 SF1Q15637 639 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 LINC00301Q8NCQ3 95 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 NCSTNQ92542 709 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 CISHQ9NSE2 258 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 INTS13Q9NVM9 706 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 IL1RAPL1Q9NZN1 696 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 CEMIPQ8WUJ3 1361 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 A0A0B4J269 797 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM221BA6H8Z2 402 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 QSOX1O00391 747 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC25A12O75746 678 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 CATP04040 527 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ERCC1P07992 297 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ELK3P41970 407 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 MMP13P45452 471 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 PURAQ00577 322 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 CERCAMQ5T4B2 595 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 TATDN1Q6P1N9 297 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 DNAJB7Q7Z6W7 309 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ADGRA1Q86SQ6 560 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 STX19Q8N4C7 294 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ARL14Q8N4G2 192 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ADAMTS19Q8TE59 1207 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 BSNDQ8WZ55 320 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 TM9SF4Q92544 642 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 C5orf34Q96MH7 638 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 USB1Q9BQ65 265 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 POLR1EQ9GZS1 481 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 ACSS2Q9NR19 701 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 COPS7AQ9UBW8 275 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 FBXW2Q9UKT8 454 aa9.4□□□□□ -0.9
LIMCH1-202ENST00000381753 DGKIO75912 1065 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 JCHAINP01591 159 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 ASGR2P07307 311 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 NPR3P17342 541 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 PSMC3P17980 439 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC1A1P43005 524 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 PRIM2P49643 509 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 HDAC4P56524 1084 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 IL2P60568 153 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 AP2B1P63010 937 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 BMPR2Q13873 1038 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 MMAAQ8IVH4 418 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 TMEM156Q8N614 296 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 TRIM15Q9C019 465 aa9.4□□□□□ -0.91
LIMCH1-202ENST00000381753 XPO4Q9C0E2 1151 aaKnown RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms