RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 POLR2EP19388 210 aaKnown RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 TFE3P19532 575 aaPredicted RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 HNRNPH3P31942 346 aaKnown RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 RFC1P35251 1148 aaPredicted RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 ZNF143P52747 638 aaPredicted RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 AIF1P55008 147 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 SLC12A1Q13621 1099 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 C15orf59Q2T9L4 293 aaPredicted RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 CCDC14Q49A88 953 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 HEATR6Q6AI08 1181 aaKnown RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 WDR59Q6PJI9 974 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 SERPINA13PQ6UXR4 307 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 WDR5BQ86VZ2 330 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 CCAR2Q8N163 923 aaKnown RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 CFAP52Q8N1V2 620 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 OLIG1Q8TAK6 271 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 C1orf74Q96LT6 269 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 HAPLN3Q96S86 360 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 DNAJC7Q99615 494 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 GABRG3Q99928 467 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 NCAPGQ9BPX3 1015 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 CNPY3Q9BT09 278 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 ABHD10Q9NUJ1 306 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 ELOVL2Q9NXB9 296 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 TAS2R14Q9NYV8 317 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 CALCOCO1Q9P1Z2 691 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 BCCIPQ9P287 314 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLK3-224ENST00000568605 EBF1Q9UH73 591 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 ADAMTS1Q9UHI8 967 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 RAB23Q9ULC3 237 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 R4GN57 208 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 TCRBV5S1A1TA0A578 114 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 AXIN1O15169 862 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 CCP110O43303 1012 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ATMINO43313 823 aaPredicted RBP13.4□□□□□ -0.26
CLK3-224ENST00000568605 LILRB5O75023 590 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 CLDN11O75508 207 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 GJB6O95452 261 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 FNTBP49356 437 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 CDH4P55283 916 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ST8SIA6P61647 398 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 LMAN2Q12907 356 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 EFHC2Q5JST6 749 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 PPP1R15BQ5SWA1 713 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 EMC10Q5UCC4 262 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 RNF219Q5W0B1 726 aaPredicted RBP13.4□□□□□ -0.26
CLK3-224ENST00000568605 MBLAC2Q68D91 279 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 PLEKHA7Q6IQ23 1121 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ANO7Q6IWH7 933 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 FBXL22Q6P050 247 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 TMC6Q7Z403 805 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 C11orf74Q86VG3 221 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 WFDC5Q8TCV5 224 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 FNIP1Q8TF40 1166 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 NTAN1Q96AB6 310 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 P2RY11Q96G91 374 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 SPACA7Q96KW9 195 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ADAM33Q9BZ11 813 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ISCUQ9H1K1 167 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ZDHHC4Q9NPG8 344 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 C2orf42Q9NWW7 574 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 THAP10Q9P2Z0 257 aaPredicted RBP13.4□□□□□ -0.26
CLK3-224ENST00000568605 CLEC4EQ9ULY5 219 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 PLA2G4CQ9UP65 541 aa13.4□□□□□ -0.26
CLK3-224ENST00000568605 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 SSU72P8A0A1W2PR75 194 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 TCRBV21S2A2A0A5A6 115 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 AKR1B10O60218 316 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 SYNCRIPO60506 623 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 ADAM23O75077 832 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 RNF8O76064 485 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 LMNAP02545 664 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 PLEKP08567 350 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 CHRM1P11229 460 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 PSMA2P25787 234 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 CD70P32970 193 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 GGCXP38435 758 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 ATXN1P54253 815 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 RPL7AP62424 266 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 ZNF177Q13360 481 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 MAMLD1Q13495 774 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 BYSLQ13895 437 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 ZNF234Q14588 700 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 ARID5BQ14865 1188 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 C5orf22Q49AR2 442 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 FNDC3BQ53EP0 1204 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 ALKBH5Q6P6C2 394 aaKnown RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 TMEM92Q6UXU6 159 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 CEP68Q76N32 757 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 KIAA0907Q7Z7F0 614 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 PGBD3Q8N328 593 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 GAB3Q8WWW8 586 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 CENPIQ92674 756 aaPredicted RBP13.39□□□□□ -0.27
CLK3-224ENST00000568605 MRFAP1L1Q96HT8 127 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 RBSNQ9H1K0 784 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 EPC1Q9H2F5 836 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 CACNA2D2Q9NY47 1150 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 ARHGAP20Q9P2F6 1191 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 MYO1AQ9UBC5 1043 aa13.39□□□□□ -0.27
CLK3-224ENST00000568605 STON1Q9Y6Q2 735 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms