RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 VN1R3Q9BXE9 311 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 MTIF3Q9H2K0 278 aaKnown RBP17.32■□□□□ 0.36
LDLR-206ENST00000557958 CATSPERBQ9H7T0 1116 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 ANLNQ9NQW6 1124 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 OLA1Q9NTK5 396 aaKnown RBP17.32■□□□□ 0.36
LDLR-206ENST00000557958 CTNNAL1Q9UBT7 734 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 TBK1Q9UHD2 729 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 CHMP2BQ9UQN3 213 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 TEX264Q9Y6I9 313 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 RASA4BC9J798 803 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 NDUFAB1O14561 156 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 RASA4O43374 803 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 BANF1O75531 89 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 CHN1P15882 459 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 YWHAQP27348 245 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 ZNF33AQ06730 810 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 PPIDQ08752 370 aaKnown RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 DDR2Q16832 855 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 PARP6Q2NL67 630 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 FAXCQ5TGI0 409 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 MSANTD2Q6P1R3 559 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 RSPO2Q6UXX9 243 aaPredicted RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 SCD5Q86SK9 330 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 LZTR1Q8N653 840 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 HDAC11Q96DB2 347 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 SPATA17Q96L03 361 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 VAT1Q99536 393 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 EURLQ9NYK6 297 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 SEPT10Q9P0V9 454 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 CDY1Q9Y6F8 540 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 IKBKGQ9Y6K9 419 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 I6L893 689 aaPredicted RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 METTL18O95568 372 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 MLNP12872 115 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 PSMD5Q16401 504 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 SDHAF4Q5VUM1 108 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 CCDC33Q8N5R6 958 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 ATAD1Q8NBU5 361 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 AUTS2Q8WXX7 1259 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 CEP295NLQ96MC4 621 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 RAD9AQ99638 391 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 PPANQ9NQ55 473 aaKnown RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 TLR8Q9NR97 1041 aaKnown RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 CLIC5Q9NZA1 410 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 IL37Q9NZH6 218 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 RABGEF1Q9UJ41 708 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 TLR6Q9Y2C9 796 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 SLC27A5Q9Y2P5 690 aa17.31■□□□□ 0.36
LDLR-206ENST00000557958 RRP15Q9Y3B9 282 aaKnown RBP17.31■□□□□ 0.36
LDLR-206ENST00000557958 LCHNA4D1U4 455 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 MTMR11A4FU01 709 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 CARNS1A5YM72 827 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 GMNCA6NCL1 334 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 MYO1CO00159 1063 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 CPP00450 1065 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 KRT15P19012 456 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 SSTR1P30872 391 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 HTRA4P83105 476 aaPredicted RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 GALNT2Q10471 571 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 MGAT5BQ3V5L5 792 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 C9orf50Q5SZB4 431 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 ACBD5Q5T8D3 534 aaPredicted RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 RWDD4Q6NW29 188 aaKnown RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 RNF19BQ6ZMZ0 732 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 SRRM1Q8IYB3 904 aaKnown RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 FBXO22Q8NEZ5 403 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 FBF1Q8TES7 1133 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 LRRN4Q8WUT4 740 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 CASP10Q92851 521 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 FBXO32Q969P5 355 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 TBC1D31Q96DN5 1066 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 XPO6Q96QU8 1125 aaKnown RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 SEPT5Q99719 369 aaPredicted RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 DONSONQ9NYP3 566 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 NKIRAS1Q9NYS0 192 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 IGSF9Q9P2J2 1179 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 ZC3H7BQ9UGR2 993 aaKnown RBP17.3■□□□□ 0.36
LDLR-206ENST00000557958 TRHDEQ9UKU6 1024 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 NR2E3Q9Y5X4 410 aa17.3■□□□□ 0.36
LDLR-206ENST00000557958 COL4A6Q14031 1691 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 FAM92AA1XBS5 289 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 GRXCR1A8MXD5 290 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 TBC1D4O60343 1298 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 PAGE1O75459 146 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 SOAT2O75908 522 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 FAM107AO95990 144 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 SOD2P04179 222 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 BRAFP15056 766 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 OR1D2P34982 312 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 GARSP41250 739 aaKnown RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 MSH2P43246 934 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 NRG1Q02297 640 aaPredicted RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 MTA1Q13330 715 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 SYCP2LQ5T4T6 812 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 ITPRIPL1Q6GPH6 555 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 CAND1Q86VP6 1230 aaKnown RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 STKLD1Q8NE28 680 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 MDM1Q8TC05 714 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 DYDC1Q8WWB3 177 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 MAML1Q92585 1016 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms