RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ADH1CP00326 375 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 SP9P0CG40 484 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 KRT3P12035 628 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 GZMAP12544 262 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 PDGFRAP16234 1089 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TIE1P35590 1138 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 EIF2DP41214 584 aaKnown RBP9.55□□□□□ -0.88
VPS35-206ENST00000565228 PXNP49023 591 aaPredicted RBP9.55□□□□□ -0.88
VPS35-206ENST00000565228 AUHQ13825 339 aaKnown RBP9.55□□□□□ -0.88
VPS35-206ENST00000565228 ANGPT1Q15389 498 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 CA9Q16790 459 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 CDO1Q16878 200 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 C5orf22Q49AR2 442 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 C2orf27AQ580R0 203 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 MANEALQ5VSG8 457 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 NUGGCQ68CJ6 796 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TXNRD3NBQ6F5E7 133 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 ADIPOR2Q86V24 386 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TMEM139Q8IV31 216 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 C1orf210Q8IVY1 113 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 LGI2Q8N0V4 545 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 PYROXD2Q8N2H3 581 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 CCDC33Q8N5R6 958 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TERB1Q8NA31 727 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 IL17RCQ8NAC3 791 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 OR8K1Q8NGG5 319 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 RPLP0P6Q8NHW5 317 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 GOLGA1Q92805 767 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 MSANTD3Q96H12 275 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 PNKPQ96T60 521 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 NELL2Q99435 816 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 DCLK3Q9C098 648 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TKTL2Q9H0I9 626 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 ARHGEF4Q9NR80 690 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 SPTLC3Q9NUV7 552 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 NDFIP2Q9NV92 336 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 DNAJC17Q9NVM6 304 aaKnown RBP9.55□□□□□ -0.88
VPS35-206ENST00000565228 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS35-206ENST00000565228 A0A0U1RQJ8 604 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CHURC1-FNTBB4DL54 471 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CALB1P05937 261 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 ABCB4P21439 1286 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 GPD1P21695 349 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 DRD1P21728 446 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 FECHP22830 423 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 MZF1P28698 734 aaPredicted RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 WASP42768 502 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CTSOP43234 321 aaPredicted RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 PTPN9P43378 593 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 HARS2P49590 506 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 GALCP54803 685 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 DEUP1Q05D60 604 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 GRSF1Q12849 480 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS35-206ENST00000565228 LMAN2Q12907 356 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 SRSF5Q13243 272 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 PPP2R5DQ14738 602 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 NUMA1Q14980 2115 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 PTPRNQ16849 979 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 FUT11Q495W5 492 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 TDRD12Q587J7 1177 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 CXorf57Q6NSI4 855 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 KIAA1211LQ6NV74 962 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 DNAJC24Q6P3W2 148 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 APCDD1Q8J025 514 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 ALLCQ8N6M5 410 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 DDI1Q8WTU0 396 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 FAM172AQ8WUF8 416 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CYB5D2Q8WUJ1 264 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 ATRIPQ8WXE1 791 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 ZNF653Q96CK0 615 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 TMA16Q96EY4 203 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 ALG14Q96F25 216 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 MYO19Q96H55 970 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 MRFAP1L1Q96HT8 127 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS35-206ENST00000565228 SELENOOQ9BVL4 669 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 SLC6A17Q9H1V8 727 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 MTG2Q9H4K7 406 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CD93Q9NPY3 652 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 SPATA6Q9NWH7 488 aaPredicted RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS35-206ENST00000565228 GPATCH2LQ9NWQ4 482 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 STIM2Q9P246 746 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 MYO1AQ9UBC5 1043 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 CNOT8Q9UFF9 292 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 VANGL2Q9ULK5 521 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 ZNF510Q9Y2H8 683 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 SLC27A6Q9Y2P4 619 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 REXO2Q9Y3B8 237 aaKnown RBP9.54□□□□□ -0.88
VPS35-206ENST00000565228 OR51B4Q9Y5P0 310 aa9.54□□□□□ -0.88
VPS35-206ENST00000565228 IGLV3-10A0A075B6K4 115 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 A0A1W2PQF6 199 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 RCCD1A6NED2 376 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 DRGXA6NNA5 263 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 RNF103O00237 685 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 KLF8O95600 359 aaPredicted RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 CYP1A2P05177 515 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 IL1R2P27930 398 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 CCR1P32246 355 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 RDXP35241 583 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 384.4 ms