RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OSBPL3Q9H4L5 887 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 AASDHPPTQ9NRN7 309 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 IL12AP29459 219 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 OCLNQ16625 522 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 ADAM33Q9BZ11 813 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 LOC102724428A0A0B4J2F2 783 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CES2O00748 559 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 TRIM66O15016 1216 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 PLEKHA8P1O95397 391 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 SEC24AO95486 1093 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 IRAK1P51617 712 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 SIK1P57059 783 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 USF2Q15853 346 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 AKAP14Q86UN6 197 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 GAS2L3Q86XJ1 694 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 BSNDQ8WZ55 320 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 OSBPL11Q9BXB4 747 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 ETAA1Q9NY74 926 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 IGSF9BQ9UPX0 1349 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 NPC1L1Q9UHC9 1359 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CRABP2P29373 138 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 RPL3P39023 403 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 HUNKP57058 714 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 SGCGQ13326 291 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 RNF145Q96MT1 663 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 ACOX2Q99424 681 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 SHCBP1LQ9BZQ2 653 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 PTGFRNQ9P2B2 879 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 GRIP1Q9Y3R0 1128 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 PLEKHG2Q9H7P9 1386 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 F9P00740 461 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 HSD3B1P14060 373 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 BMP7P18075 431 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 STK32CQ86UX6 486 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 DYNLL2Q96FJ2 89 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM51Q9NW97 253 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 DSEQ9UL01 958 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CDH9Q9ULB4 789 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 PCP4L1A6NKN8 68 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 MSR1P21757 451 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 HSD17B3P37058 310 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CLEC4GQ6UXB4 293 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 GPAMQ9HCL2 828 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 MED24O75448 989 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 ITGB6P18564 788 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 FASTKQ14296 549 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 ZNF589Q86UQ0 364 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 MTA2O94776 668 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 TUBA4AP68366 448 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 TMPRSS6Q8IU80 811 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 HPDLQ96IR7 371 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 TBC1D24Q9ULP9 559 aa14.22□□□□□ -0.13
CCDC88A-201ENST00000263630 CEBPGP53567 150 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 PDIA5Q14554 519 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 BROXQ5VW32 411 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 SYTL5Q8TDW5 730 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 RHOBTB2Q9BYZ6 727 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 METTL5Q9NRN9 209 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 SIN3BO75182 1162 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 NPR2P20594 1047 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 CPT1AP50416 773 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 FRG1Q14331 258 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM126BQ8IXS8 530 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 UBE2E3Q969T4 207 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 PSIP1O75475 530 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 ATF6P18850 670 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 COILP38432 576 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 PDCD4Q53EL6 469 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 XKR3Q5GH77 459 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 DGCR6LQ9BY27 220 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 EURLQ9NYK6 297 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 PTCH1Q13635 1447 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 GRAP2O75791 330 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 SP100P23497 879 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 NR1D2Q14995 579 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM120AQ9BXJ8 343 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 RMI1Q9H9A7 625 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 RAD51CO43502 376 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 STK4Q13043 487 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 EPHA7Q15375 998 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 ADGRF4Q8IZF3 695 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 SPACA7Q96KW9 195 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 ZNF354BQ96LW1 612 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 TEX13BQ9BXU2 312 aa14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 MRPS7Q9Y2R9 242 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-201ENST00000263630 STAG3L1P0CL83 205 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC1A6P48664 564 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 TTLL6Q8N841 843 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 KCNB2Q92953 911 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 COLEC11Q9BWP8 271 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 UPB1Q9UBR1 384 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 ACOT9Q9Y305 439 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 MCIDASD6RGH6 385 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 PLIN3O60664 434 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 FGFR1P11362 822 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 OLR1P78380 273 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 PKN1Q16512 942 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 CNPPD1Q9BV87 410 aa14.21□□□□□ -0.14
CCDC88A-201ENST00000263630 CDADC1Q9BWV3 514 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms