RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ARF3P61204 181 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PSMC5P62195 406 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 MRPS6P82932 125 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ARF1P84077 181 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ATP2C1P98194 919 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ROR2Q01974 943 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 MGAT3Q09327 533 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 EPHA7Q15375 998 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CLPPQ16740 277 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 TSTQ16762 297 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 KIZQ2M2Z5 673 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 TMEM266Q2M3C6 531 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 DPY19L1Q2PZI1 675 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC157Q569K6 752 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 XKR9Q5GH70 373 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 XKR3Q5GH77 459 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF484Q5JVG2 852 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ARMC4Q5T2S8 1044 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC183Q5T5S1 534 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 SFMBT2Q5VUG0 894 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 RPUSD3Q6P087 351 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 TAF2Q6P1X5 1199 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PSRC1Q6PGN9 363 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 B4GALNT4Q76KP1 1039 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 YTHDF3Q7Z739 585 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CREG2Q8IUH2 290 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 EPHX4Q8IUS5 362 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC50Q8IVM0 306 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 MRPL41Q8IXM3 137 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ELOA2Q8IYF1 753 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 FIBCD1Q8N539 461 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PIGOQ8TEQ8 1089 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 JAKMIP2Q96AA8 810 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 FAM167AQ96KS9 214 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CEP170P1Q96L14 293 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 USP28Q96RU2 1077 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 YME1L1Q96TA2 773 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PLIN2Q99541 437 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 YIPF2Q9BWQ6 316 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 FUT8Q9BYC5 575 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 LACRTQ9GZZ8 138 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PCIF1Q9H4Z3 704 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 IPPKQ9H8X2 491 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 ZMAT3Q9HA38 289 aaKnown RBP4.79□□□□□ -1.64
SF3B1-202ENST00000409915 SUGCTQ9HAC7 445 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CYP4F11Q9HBI6 524 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 GGA2Q9UJY4 613 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 FBXL21Q9UKT6 434 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 MYO6Q9UM54 1294 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 WDR37Q9Y2I8 494 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 HIF3AQ9Y2N7 669 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHGC4Q9Y5F7 938 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHGB5Q9Y5G0 923 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CDY2AQ9Y6F7 541 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 TET1Q8NFU7 2136 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 CHD7Q9P2D1 2997 aa4.79□□□□□ -1.64
SF3B1-202ENST00000409915 COL1A2P08123 1366 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SMIM35A0A1B0GVV1 85 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC154A6NI56 674 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 AQP12BA6NM10 295 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 EFCAB8A8MWE9 144 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 GSTA4O15217 222 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ARHGAP6O43182 974 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 KIF5CO60282 957 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CSDE1O75534 798 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 FGBP02675 491 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 MT-ND3P03897 115 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 THBDP07204 575 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ADRB2P07550 413 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 THEGLP0DJG4 465 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SPATA31C1P0DKV0 1188 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PORP16435 677 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 FERP16591 822 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ITIH2P19823 946 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 FGFR4P22455 802 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 RPL13P26373 211 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CD52P31358 61 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LMAN1P49257 510 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 RABGGTBP53611 331 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 SLC5A3P53794 718 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 POLGP54098 1239 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 TPD52P55327 224 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PCBP4P57723 403 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 RAB1AP62820 205 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 TUBB4BP68371 445 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 DEFB103AP81534 67 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 IRF9Q00978 393 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 UBXN1Q04323 297 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 ORC2Q13416 577 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PTK2BQ14289 1009 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 LPIN1Q14693 890 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 EMC2Q15006 297 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PTPAQ15257 358 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 POU4F3Q15319 338 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 TARBP2Q15633 366 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PAN2Q504Q3 1202 aaKnown RBP4.78□□□□□ -1.64
SF3B1-202ENST00000409915 CT83Q5H943 113 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 PPM1JQ5JR12 505 aa4.78□□□□□ -1.64
SF3B1-202ENST00000409915 FAM26FQ5R3K3 315 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms