RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SGK2Q9HBY8 427 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 AGO1Q9UL18 857 aaKnown RBP17.73■□□□□ 0.43
VPS29-204ENST00000548259 PCDHGA1Q9Y5H4 931 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 PVALEFA0A1B0GWK0 134 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 HHLA1C9JL84 531 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 FSBPO95073 299 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 VNN1O95497 513 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 ASS1P00966 412 aaKnown RBP17.72■□□□□ 0.43
VPS29-204ENST00000548259 C1SP09871 688 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 PIK3CAP42336 1068 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 SLC8A3P57103 927 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 PDE4CQ08493 712 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 ZACNQ401N2 412 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 MPPE1Q53F39 396 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 DENND1CQ8IV53 801 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 ACE2Q9BYF1 805 aaPredicted RBP17.72■□□□□ 0.43
VPS29-204ENST00000548259 CYP3A43Q9HB55 503 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 SLC39A2Q9NP94 309 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 MARCH2Q9P0N8 246 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 HMGXB4Q9UGU5 601 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 NCKAP1Q9Y2A7 1128 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 ASXL3Q9C0F0 2248 aa17.72■□□□□ 0.43
VPS29-204ENST00000548259 PLXNB3Q9ULL4 1909 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 CAPN9O14815 690 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 IKBKBO14920 756 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 SPTLC2O15270 562 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 SYT1P21579 422 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 ACSL1P33121 698 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 NASPP49321 788 aaPredicted RBP17.71■□□□□ 0.43
VPS29-204ENST00000548259 HARS2P49590 506 aaKnown RBP17.71■□□□□ 0.43
VPS29-204ENST00000548259 INCA1Q0VD86 236 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 SCD5Q86SK9 330 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 MARCH9Q86YJ5 346 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 SORCS1Q8WY21 1168 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 PLD4Q96BZ4 506 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 BIRC7Q96CA5 298 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 DUSP16Q9BY84 665 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 FRMD4BQ9Y2L6 1034 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 AK5Q9Y6K8 562 aa17.71■□□□□ 0.43
VPS29-204ENST00000548259 SLC12A8A0AV02 714 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 CAPN8A6NHC0 703 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 H0Y8X5 98 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 PLK4O00444 970 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ATXN7O15265 892 aaPredicted RBP17.7■□□□□ 0.42
VPS29-204ENST00000548259 YKT6O15498 198 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 PAPSS1O43252 624 aaPredicted RBP17.7■□□□□ 0.42
VPS29-204ENST00000548259 TSPAN3O60637 253 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 PPP6R2O75170 966 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ATP5BP06576 529 aaKnown RBP17.7■□□□□ 0.42
VPS29-204ENST00000548259 CTSKP43235 329 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ASPAP45381 313 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 RACK1P63244 317 aaKnown RBP17.7■□□□□ 0.42
VPS29-204ENST00000548259 EHHADHQ08426 723 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 CUL4AQ13619 759 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 SV2AQ7L0J3 742 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 SLC9A9Q8IVB4 645 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 LINC00301Q8NCQ3 95 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 PLEKHO2Q8TD55 490 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 TMC2Q8TDI7 906 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 GANCQ8TET4 914 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ELMO3Q96BJ8 720 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ZNF396Q96N95 335 aaPredicted RBP17.7■□□□□ 0.42
VPS29-204ENST00000548259 SUN2Q9UH99 717 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 SCML1Q9UN30 329 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 USP3Q9Y6I4 520 aa17.7■□□□□ 0.42
VPS29-204ENST00000548259 ASH1LQ9NR48 2969 aaKnown RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 ENC1O14682 589 aa17.69■□□□□ 0.42
VPS29-204ENST00000548259 CUTAO60888 179 aa17.69■□□□□ 0.42
VPS29-204ENST00000548259 RNASEH1O60930 286 aaKnown RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 ZIC2O95409 532 aaPredicted RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 LDOC1O95751 146 aaPredicted RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 ITGAVP06756 1048 aa17.69■□□□□ 0.42
VPS29-204ENST00000548259 ABCB4P21439 1286 aa17.69■□□□□ 0.42
VPS29-204ENST00000548259 ZNF776Q68DI1 518 aaPredicted RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 TTC39CQ8N584 583 aa17.69■□□□□ 0.42
VPS29-204ENST00000548259 ZNF557Q8N988 423 aaPredicted RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 OLA1Q9NTK5 396 aaKnown RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 GOLGA4Q13439 2230 aaKnown RBP17.69■□□□□ 0.42
VPS29-204ENST00000548259 KCNK3O14649 394 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 VILLO15195 856 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 RFPL3O75679 317 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 HLA-DRAP01903 254 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 SEMG2Q02383 582 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 SPOPLQ6IQ16 392 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 ZNF605Q86T29 641 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 FAM217AQ8IXS0 508 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 AHI1Q8N157 1196 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 RBBP8NLQ8NC74 664 aaPredicted RBP17.68■□□□□ 0.42
VPS29-204ENST00000548259 TMEM174Q8WUU8 243 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 CRELD1Q96HD1 420 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 ELF4Q99607 663 aaPredicted RBP17.68■□□□□ 0.42
VPS29-204ENST00000548259 BACH2Q9BYV9 841 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 UBXN6Q9BZV1 441 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 BLZF1Q9H2G9 400 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 TMEM245Q9H330 911 aa17.68■□□□□ 0.42
VPS29-204ENST00000548259 A0A1B0GTQ1 180 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 POLR2DO15514 142 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 DLDP09622 509 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 C7P10643 843 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 CD58P19256 250 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms