RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BUB1O43683 1085 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 ARSAP15289 507 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 GJC1P36383 396 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 CXCR3P49682 368 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 VCPP55072 806 aaKnown RBP15.53■□□□□ 0.08
NUP54-213ENST00000513352 HDAC4P56524 1084 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 FCHO2Q0JRZ9 810 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 PPP2R5DQ14738 602 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 PDGFRLQ15198 375 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 ARL13BQ3SXY8 428 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 DAB2IPQ5VWQ8 1189 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 Q6ZNB5 142 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 CHSY1Q86X52 802 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 TTC8Q8TAM2 541 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 CSGALNACT1Q8TDX6 532 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 OSCP1Q8WVF1 389 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 ATP2A3Q93084 1043 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 BTN2A3PQ96KV6 586 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 UHRF1Q96T88 793 aaPredicted RBP15.53■□□□□ 0.08
NUP54-213ENST00000513352 TSGA10Q9BZW7 698 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 LACRTQ9GZZ8 138 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 TKTL2Q9H0I9 626 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 LINC00597Q9H2U6 94 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 EBF3Q9H4W6 596 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 TMEM51Q9NW97 253 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 PCSK1NQ9UHG2 260 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 XPO7Q9UIA9 1087 aaKnown RBP15.53■□□□□ 0.08
NUP54-213ENST00000513352 LCMT1Q9UIC8 334 aa15.53■□□□□ 0.08
NUP54-213ENST00000513352 MYOFQ9NZM1 2061 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 A0A0A6YYK5 440 aaPredicted RBP15.52■□□□□ 0.08
NUP54-213ENST00000513352 A0A0U1RQJ8 604 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 TRDMT1O14717 391 aaKnown RBP15.52■□□□□ 0.08
NUP54-213ENST00000513352 NARSO43776 548 aaKnown RBP15.52■□□□□ 0.08
NUP54-213ENST00000513352 PRPSAP2O60256 369 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 ACSL4O60488 711 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 TSPAN3O60637 253 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 PROSCO94903 275 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 NFATC1O95644 943 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 GGCXP38435 758 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 TNK2Q07912 1038 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 RAP1GAP2Q684P5 730 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 TPGS1Q6ZTW0 290 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 CPA6Q8N4T0 437 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 ATRIPQ8WXE1 791 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 CENPIQ92674 756 aaPredicted RBP15.52■□□□□ 0.08
NUP54-213ENST00000513352 BHMTQ93088 406 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 DDX50Q9BQ39 737 aaKnown RBP15.52■□□□□ 0.08
NUP54-213ENST00000513352 SIK2Q9H0K1 926 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 TMPRSS4Q9NRS4 437 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 SORCS3Q9UPU3 1222 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 PPP2R2CQ9Y2T4 447 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 DUSP10Q9Y6W6 482 aa15.52■□□□□ 0.08
NUP54-213ENST00000513352 GOLGA6L7A0A1B0GV03 622 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 KCNU1A8MYU2 1149 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 PJA2O43164 708 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 KRT86O43790 486 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 GREM1O60565 184 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 LRCH4O75427 683 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 PAGE1O75459 146 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 MTA2O94776 668 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 ENDOD1O94919 500 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 LATS1O95835 1130 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 MIPP30301 263 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 EIF4EBP2Q13542 120 aaPredicted RBP15.51■□□□□ 0.07
NUP54-213ENST00000513352 ACAP1Q15027 740 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 IFI16Q16666 785 aaKnown RBP15.51■□□□□ 0.07
NUP54-213ENST00000513352 EML3Q32P44 896 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 EFHC2Q5JST6 749 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 RFWD3Q6PCD5 774 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 BNIPLQ7Z465 357 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 CCDC185Q8N715 623 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 NIPA2Q8N8Q9 360 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 IRF7Q92985 503 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 OTUB2Q96DC9 234 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 NCAPGQ9BPX3 1015 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 ZWILCHQ9H900 591 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 CD320Q9NPF0 282 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 LZTFL1Q9NQ48 299 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 ARHGEF38Q9NXL2 777 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 MUTYHQ9UIF7 546 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 GUCA1BQ9UMX6 200 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 SNX10Q9Y5X0 201 aa15.51■□□□□ 0.07
NUP54-213ENST00000513352 BTNL10A8MVZ5 291 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 F5H5T6 163 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 SPOPO43791 374 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 BUB1BO60566 1050 aaPredicted RBP15.5■□□□□ 0.07
NUP54-213ENST00000513352 MOCS3O95396 460 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 ADH1CP00326 375 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 CYBBP04839 570 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 SRFP11831 508 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 TNNT1P13805 278 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 TACR2P21452 398 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 CHKAP35790 457 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 ARHGAP25P42331 645 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 NR1H3Q13133 447 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 MTA1Q13330 715 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 RUNX3Q13761 415 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 HADHQ16836 314 aaKnown RBP15.5■□□□□ 0.07
NUP54-213ENST00000513352 ANO4Q32M45 955 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 ITPRIPL2Q3MIP1 535 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms