RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CSPG4P5Q96PW8 444 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 KCTD15Q96SI1 283 aaPredicted RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 FERMT1Q9BQL6 677 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 MRPL9Q9BYD2 267 aaKnown RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 CWC15Q9P013 229 aaKnown RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 NOVA2Q9UNW9 492 aaKnown RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 FARP1Q9Y4F1 1045 aaPredicted RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 TLDC2A0PJX2 215 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 YJEFN3A6XGL0 299 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 E7ENQ6 273 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 SYN3O14994 580 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 EIF3HO15372 352 aaKnown RBP eCLIP17.46■□□□□ 0.38
LDLR-206ENST00000557958 USP17L7P0C7H9 530 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 HPDP32754 393 aaPredicted RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 SLC11A1P49279 550 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 ZNF135P52742 658 aaPredicted RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 ATXN1P54253 815 aaKnown RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 FPGSQ05932 587 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 NME3Q13232 169 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 HIF1AQ16665 826 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 KYNUQ16719 465 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 OR10T2Q8NGX3 314 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 NDRG1Q92597 394 aaKnown RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 RTP4Q96DX8 246 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 SERPINB12Q96P63 405 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 ADAM33Q9BZ11 813 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 CNOT10Q9H9A5 744 aaKnown RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 SAYSD1Q9NPB0 183 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 DNAJC17Q9NVM6 304 aaKnown RBP17.46■□□□□ 0.38
LDLR-206ENST00000557958 NINJ2Q9NZG7 142 aa17.46■□□□□ 0.38
LDLR-206ENST00000557958 CCDC85CA6NKD9 419 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 DGKIO75912 1065 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 OAZ2O95190 189 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 PPIGQ13427 754 aaKnown RBP eCLIP17.45■□□□□ 0.384e-16■□□□□ 8.5
LDLR-206ENST00000557958 STAT4Q14765 748 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 NFE2Q16621 373 aaPredicted RBP17.45■□□□□ 0.38
LDLR-206ENST00000557958 ZSCAN26Q16670 478 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 PM20D1Q6GTS8 502 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 C16orf59Q7L2K0 433 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 BEND5Q7L4P6 421 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 GPRIN1Q7Z2K8 1008 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 LRRC43Q8N309 656 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 COLEC11Q9BWP8 271 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 FRMD8Q9BZ67 464 aaPredicted RBP17.45■□□□□ 0.38
LDLR-206ENST00000557958 TMEM51Q9NW97 253 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 MTMR10Q9NXD2 777 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 NAALADL1Q9UQQ1 740 aa17.45■□□□□ 0.38
LDLR-206ENST00000557958 SF3B1O75533 1304 aaKnown RBP eCLIP17.44■□□□□ 0.389e-6■■■■■ 68.9
LDLR-206ENST00000557958 SYNJ2BP-COX16A0A087WUM0 186 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 A0A087WUV0 522 aaPredicted RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 HACD1B0YJ81 288 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 KCNN4O15554 427 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 TCEA3O75764 348 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 CACNA2D1P54289 1103 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 MAGOHP61326 146 aaKnown RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 PPP2R2AP63151 447 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 BASP1P80723 227 aaKnown RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 SCAPQ12770 1279 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 SYPL2Q5VXT5 272 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 HFE2Q6ZVN8 426 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 TAOK1Q7L7X3 1001 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 UHMK1Q8TAS1 419 aaKnown RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 RNF139Q8WU17 664 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 CPT1BQ92523 772 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 TLCD1Q96CP7 247 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 PPCSQ9HAB8 311 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 COX16Q9P0S2 106 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 TTC3P53804 2025 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 ALDH7A1P49419 539 aaKnown RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 ATP1A2P50993 1020 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 GNGT1P63211 74 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 SLC45A4Q5BKX6 768 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 OTUD1Q5VV17 481 aaPredicted RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 PDZD4Q76G19 769 aaPredicted RBP17.44■□□□□ 0.38
LDLR-206ENST00000557958 PDIK1LQ8N165 341 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 NAT8LQ8N9F0 302 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 FUBP3Q96I24 572 aaKnown RBP eCLIP17.44■□□□□ 0.38
LDLR-206ENST00000557958 B3GALT6Q96L58 329 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 KLC2Q9H0B6 622 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 PIGVQ9NUD9 493 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 TMEM30AQ9NV96 361 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 DDIT4Q9NX09 232 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 ADAM28Q9UKQ2 775 aa17.44■□□□□ 0.38
LDLR-206ENST00000557958 SMIM23A6NLE4 172 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 CHADO15335 359 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 EFCAB14O75071 495 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 GALTP07902 379 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 GOT1P17174 413 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 GRIK1P39086 918 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 BTG3Q14201 252 aaPredicted RBP17.43■□□□□ 0.38
LDLR-206ENST00000557958 SKIDA1Q1XH10 827 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 FAM171A1Q5VUB5 890 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 LRRTM3Q86VH5 581 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 YME1L1Q96TA2 773 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 HTATIP2Q9BUP3 242 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 RHOBTB2Q9BYZ6 727 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 ZCWPW1Q9H0M4 648 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 C10orf88Q9H8K7 445 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 TMLHEQ9NVH6 421 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms