RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 E2F1Q01094 437 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 WDR45BQ5MNZ6 344 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.23□□□□□ -1.09
NUP54-215ENST00000514313 GALNT4Q8N4A0 578 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D22AQ8WUA7 517 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 SLC25A43Q8WUT9 341 aaPredicted RBP8.23□□□□□ -1.09
NUP54-215ENST00000514313 ASB10Q8WXI3 467 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 RNF125Q96EQ8 232 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 NEUROD6Q96NK8 337 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 KRTAP4-8Q9BYQ9 185 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 GABRQQ9UN88 632 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 SH2B3Q9UQQ2 575 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 LMTK3Q96Q04 1460 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3DA0A087WVF3 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3IA0A087WXS9 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3EA0A087X179 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3KA0A087X1G2 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 A0A1W2PPH5 198 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3BA6NDS4 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3FA6NER0 549 aaPredicted RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3LB9A6J9 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 SEPT4O43236 478 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 DDX58O95786 925 aaKnown RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3HP0C7X1 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 ABCD3P28288 659 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 RCAN1P53805 252 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TPTEP56180 551 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 R3HDM1Q15032 1099 aaKnown RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 FAM187BQ17R55 369 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 NRN1LQ496H8 165 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3GQ6DHY5 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3CQ6IPX1 549 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D3Q8IZP1 549 aaPredicted RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 PTGR2Q8N8N7 351 aaPredicted RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 TDRD7Q8NHU6 1098 aaKnown RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 C7orf26Q96N11 449 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 PIGSQ96S52 555 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 BARD1Q99728 777 aaKnown RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 BDH2Q9BUT1 245 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 ALG8Q9BVK2 526 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 KLC4Q9NSK0 619 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 PARPBPQ9NWS1 579 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 KCTD5Q9NXV2 234 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 EHD3Q9NZN3 535 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 TESQ9UGI8 421 aaKnown RBP8.22□□□□□ -1.09
NUP54-215ENST00000514313 SLC12A4Q9UP95 1085 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 CYP46A1Q9Y6A2 500 aa8.22□□□□□ -1.09
NUP54-215ENST00000514313 A0A087X0M5 115 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 CENPVL1A0A0U1RR11 272 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 A0A1B0GX30 115 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 WDR27A2RRH5 827 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 AP4M1O00189 453 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 ITGAMP11215 1152 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 ACP5P13686 325 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 MMP8P22894 467 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 ITPKBP27987 946 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 PCSK6P29122 969 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 GRK5P34947 590 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 PSMC2P35998 433 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 PGM1P36871 562 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 CCT4P50991 539 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 TAS2R50P59544 299 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 SUMO2P61956 95 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 DNASE1L3Q13609 305 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 CBFBQ13951 182 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 TSTQ16762 297 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 ACSM6Q6P461 480 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 KIAA1324Q6UXG2 1013 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 ANKRD44Q8N8A2 993 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 ANKRD52Q8NB46 1076 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 CLEC4CQ8WTT0 213 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 TRMT61AQ96FX7 289 aaKnown RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 PGBD1Q96JS3 809 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 PHF7Q9BWX1 381 aaPredicted RBP8.21□□□□□ -1.1
NUP54-215ENST00000514313 IL21RQ9HBE5 538 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 CNPY2Q9Y2B0 182 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 RPS6KL1Q9Y6S9 549 aa8.21□□□□□ -1.1
NUP54-215ENST00000514313 PEX12O00623 359 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 YY2O15391 372 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 HNRNPRO43390 633 aaKnown RBP8.2□□□□□ -1.1
NUP54-215ENST00000514313 NXPH3O95157 252 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ONECUT2O95948 504 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 CHN1P15882 459 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 IGHMBP2P38935 993 aaKnown RBP8.2□□□□□ -1.1
NUP54-215ENST00000514313 PDE1AP54750 535 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 FOXL2P58012 376 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 KRT32Q14532 448 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 TOMM20Q15388 145 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 GPR68Q15743 365 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 BAK1Q16611 211 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 TXNRD1Q16881 649 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 SLC45A4Q5BKX6 768 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 PTCHD4Q6ZW05 846 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 C1orf210Q8IVY1 113 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ARHGEF19Q8IW93 802 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 PALM2Q8IXS6 379 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 RFKQ969G6 155 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 ARRDC3Q96B67 414 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 FBXL20Q96IG2 436 aa8.2□□□□□ -1.1
NUP54-215ENST00000514313 PBKQ96KB5 322 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms