RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ACP6	Q9NPH0	428 aa		11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	RANBP2	P49792	3224 aa	Known RBP	11.14	□□□□□ -0.63
UBR4-208	ENST00000459947	IGLV3-25	P01717	112 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	GJA4	P35212	333 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC25A52	Q3SY17	297 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	DCAF6	Q58WW2	860 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	ADGRF1	Q5T601	910 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	MMS22L	Q6ZRQ5	1243 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	STRADA	Q7RTN6	431 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	EDEM1	Q92611	657 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	C11orf70	Q9BRQ4	267 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	EBF3	Q9H4W6	596 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	HAUS4	Q9H6D7	363 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	HEBP1	Q9NRV9	189 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	PARVA	Q9NVD7	372 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	TICRR	Q7Z2Z1	1910 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	MYO10	Q9HD67	2058 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	TNFRSF4	P43489	277 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF135	P52742	658 aa	Predicted RBP	11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	UBXN2B	Q14CS0	331 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	RABGAP1L	Q5R372	815 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	MON1B	Q7L1V2	547 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	RNF34	Q969K3	372 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC39A13	Q96H72	371 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	CALR3	Q96L12	384 aa	Known RBP	11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	LRFN3	Q9BTN0	628 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	DEF6	Q9H4E7	631 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	DONSON	Q9NYP3	566 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	IMPACT	Q9P2X3	320 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	KRBA1	A5PL33	1030 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	SIGLEC16	A6NMB1	481 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	TIMM44	O43615	452 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	GABBR2	O75899	941 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	CALCA	P01258	141 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	GYPC	P04921	128 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	SULT1E1	P49888	294 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF75D	P51815	510 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	TAC4	Q86UU9	113 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	ADGRG2	Q8IZP9	1017 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	FLCN	Q8NFG4	579 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	LRRC3B	Q96PB8	259 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	NPY6R	Q99463	290 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	CHRD	Q9H2X0	955 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	DEC1	Q9P2X7	70 aa		11.13	□□□□□ -0.63
UBR4-208	ENST00000459947	CACNG3	O60359	315 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	MFAP3L	O75121	409 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	KRT3	P12035	628 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	ARSA	P15289	507 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	RDX	P35241	583 aa	Known RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	GRIA2	P42262	883 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	MRPS21	P82921	87 aa	Known RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	ACAP1	Q15027	740 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	TMEM196	Q5HYL7	178 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	HFE2	Q6ZVN8	426 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	BBS7	Q8IWZ6	715 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CCDC105	Q8IYK2	499 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	MCOLN2	Q8IZK6	566 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CPA5	Q8WXQ8	436 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	DDIT4	Q9NX09	232 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CHD7	Q9P2D1	2997 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	TJP2	Q9UDY2	1190 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	TBX18	O95935	607 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	GPD1	P21695	349 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	AVPR2	P30518	371 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CASP14	P31944	242 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	HTR7	P34969	479 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	DEUP1	Q05D60	604 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	DMC1	Q14565	340 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	EIF4H	Q15056	248 aa	Known RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	FNIP1	Q8TF40	1166 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	FCRL2	Q96LA5	508 aa	Predicted RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	MIA3	Q5JRA6	1907 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	FAM170B	A6NMN3	283 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	GOLGA8S	H3BPF8	625 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	PENK	P01210	267 aa	Predicted RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CCR3	P51677	355 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	CWF19L1	Q69YN2	538 aa	Known RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	DCUN1D2	Q6PH85	259 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	TMC6	Q7Z403	805 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	BBS2	Q9BXC9	721 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	FAM126A	Q9BYI3	521 aa	Predicted RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	RBSN	Q9H1K0	784 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	ISCU	Q9H1K1	167 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	TMEM59L	Q9UK28	342 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	AGO1	Q9UL18	857 aa	Known RBP	11.12	□□□□□ -0.63
UBR4-208	ENST00000459947	NAALADL1	Q9UQQ1	740 aa		11.12	□□□□□ -0.63
UBR4-208	ENST00000459947		F5H5T6	163 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	MDM4	O15151	490 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	PAPSS2	O95340	614 aa	Predicted RBP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC12A1	Q13621	1099 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	LY6G5C	Q5SRR4	150 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	DENND1C	Q8IV53	801 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	CLEC4C	Q8WTT0	213 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	NT5C3B	Q969T7	300 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	PCDHB18P	Q96TA0	734 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	FBXO4	Q9UKT5	387 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC27A6	Q9Y2P4	619 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	CHURC1-FNTB	B4DL54	471 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 464.4 ms