RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 OBP2BQ9NPH6 170 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 KRT84Q9NSB2 600 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 HAUS2Q9NVX0 235 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 VPS28Q9UK41 221 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 VAV3Q9UKW4 847 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TRIM33Q9UPN9 1127 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 GPR55Q9Y2T6 319 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHB6Q9Y5E3 794 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 TRIOBPQ9H2D6 2365 aa4.83□□□□□ -1.64
SF3B1-202ENST00000409915 IGSF9BQ9UPX0 1349 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 IGKV6D-21A0A0A0MT36 114 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 H0Y3Z8 333 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SYT5O00445 386 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 TRIM38O00635 465 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 LIN7AO14910 233 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 DAPK3O43293 454 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF862O60290 1169 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 URI1O94763 535 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ERLIN2O94905 339 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 TIMP1P01033 207 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ITGB2P05107 769 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 GSNP06396 782 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 INSRRP14616 1297 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CSF2RAP15509 400 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 HOXB4P17483 251 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RPL17P18621 184 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SLC9A1P19634 815 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SYT1P21579 422 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FGFR3P22607 806 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 AMPD1P23109 780 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CDC25BP30305 580 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 HOXC8P31273 242 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 TXKP42681 527 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PDE6CP51160 858 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 STAT5BP51692 787 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 MNAT1P51948 309 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 HSD17B7P56937 341 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SMAD3P84022 425 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 NRG1Q02297 640 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CYP4A11Q02928 519 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FPGSQ05932 587 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CYP4F3Q08477 520 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SPIRE1Q08AE8 756 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FOXO1Q12778 655 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PAK1Q13153 545 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 TRPC3Q13507 836 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PKP1Q13835 747 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 LRP8Q14114 963 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 IKBKEQ14164 716 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 GRIK4Q16099 956 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 C9orf50Q5SZB4 431 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FAM160B1Q5W0V3 765 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PLA2G4FQ68DD2 849 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 MIS18BP1Q6P0N0 1132 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FAM173BQ6P4H8 233 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FIGNL1Q6PIW4 674 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 UNC5DQ6UXZ4 953 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RAB44Q7Z6P3 723 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 DEFB128Q7Z7B8 93 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SESTD1Q86VW0 696 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CPOQ8IVL8 374 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 APLFQ8IW19 511 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 C17orf53Q8N3J3 647 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PPM1NQ8N819 430 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 KREMEN2Q8NCW0 462 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RFFLQ8WZ73 363 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 N4BP2L2Q92802 583 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 BHMTQ93088 406 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 MUL1Q969V5 352 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ZC3H10Q96K80 434 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CABS1Q96KC9 395 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 C7orf26Q96N11 449 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RIT2Q99578 217 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 GDF15Q99988 308 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 GPATCH1Q9BRR8 931 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 UBE2OQ9C0C9 1292 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 WNT10AQ9GZT5 417 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 FAM49AQ9H0Q0 323 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SMARCAD1Q9H4L7 1026 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 CCDC86Q9H6F5 360 aaKnown RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RMI1Q9H9A7 625 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PREBQ9HCU5 417 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ZNF302Q9NR11 478 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 KRT82Q9NSB4 513 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 DCAF16Q9NXF7 216 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 ERAP1Q9NZ08 941 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 RGL1Q9NZL6 768 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 KIF17Q9P2E2 1029 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 WRAP73Q9P2S5 460 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 EPS15L1Q9UBC2 864 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 TUBE1Q9UJT0 475 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 BARX2Q9UMQ3 279 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-202ENST00000409915 STXBP5LQ9Y2K9 1186 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 PCDHA10Q9Y5I2 948 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 SPO11Q9Y5K1 396 aa4.82□□□□□ -1.64
SF3B1-202ENST00000409915 A0A087WWV3 80 aa4.81□□□□□ -1.64
SF3B1-202ENST00000409915 C17orf113A0A1B0GUU1 675 aa4.81□□□□□ -1.64
SF3B1-202ENST00000409915 EME2A4GXA9 379 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-202ENST00000409915 PP2D1A8MPX8 630 aa4.81□□□□□ -1.64
SF3B1-202ENST00000409915 ZBTB42B2RXF5 422 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms