RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CFAP58Q5T655 872 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 SCN4BQ8IWT1 228 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 ATAD1Q8NBU5 361 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 FUBP3Q96I24 572 aaKnown RBP eCLIP14.33□□□□□ -0.12
PTPRF-202ENST00000372405 VN1R3Q9BXE9 311 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 FAM129AQ9BZQ8 928 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 MED4Q9NPJ6 270 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 PLAAQ9Y263 795 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 MFHAS1Q9Y4C4 1052 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 OR6C75A6NL08 312 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 APOL1O14791 398 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 MAP3K6O95382 1288 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 CSF2RAP15509 400 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 IFRD2Q12894 506 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 GPS2Q13227 327 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 NFE2Q16621 373 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 DDR2Q16832 855 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 FAM182AQ5T1J6 154 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 IZUMO3Q5VZ72 239 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 ZNF280DQ6N043 979 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 HIBCHQ6NVY1 386 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 SCD5Q86SK9 330 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 ZC3H18Q86VM9 953 aaKnown RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 PSTKQ8IV42 348 aaKnown RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 OR2W6PQ8NHA6 318 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 UBLCP1Q8WVY7 318 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 P3H4Q92791 437 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 PWWP2AQ96N64 755 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 CRISPLD1Q9H336 500 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 PCDH9Q9HC56 1237 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 ETNK2Q9NVF9 386 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 DDIT4Q9NX09 232 aa14.32□□□□□ -0.12
PTPRF-202ENST00000372405 MTRF1LQ9UGC7 380 aaKnown RBP14.32□□□□□ -0.12
PTPRF-202ENST00000372405 MCF2LO15068 1137 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 POLR3GO15318 223 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 TIMP1P01033 207 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 IFNB1P01574 187 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 TGM2P21980 687 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 RFC2P35250 354 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 ADRA1BP35368 520 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 DEFB103AP81534 67 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 GBE1Q04446 702 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 SLC10A2Q12908 348 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 GPS1Q13098 491 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 EIF4EBP2Q13542 120 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 VSTM1Q6UX27 236 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 TAC4Q86UU9 113 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 LRRN4Q8WUT4 740 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 TOP1MTQ969P6 601 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 SLC9A7Q96T83 725 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 SEMA4AQ9H3S1 761 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 RC3H2Q9HBD1 1191 aaKnown RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 LRRC4CQ9HCJ2 640 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 ANAPC5Q9UJX4 755 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 PCDHB5Q9Y5E4 795 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 HEY1Q9Y5J3 304 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FAM72CH0Y354 149 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 DNALI1O14645 258 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 SOAT2O75908 522 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 IGLV3-25P01717 112 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 AMPD1P23109 780 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 PMS2P54278 862 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 USP46P62068 366 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 SCAPQ12770 1279 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 ELAVL2Q12926 359 aaKnown RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FAM72AQ5TYM5 149 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 NCBP2-AS2Q69YL0 99 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FAM72DQ6L9T8 149 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 PRSS55Q6UWB4 352 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 BEND5Q7L4P6 421 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FAM72BQ86X60 149 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 RNF168Q8IYW5 571 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FAM71DQ8N9W8 422 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 DQX1Q8TE96 717 aaKnown RBP14.31□□□□□ -0.12
PTPRF-202ENST00000372405 NTAN1Q96AB6 310 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 C8orf48Q96LL4 319 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 TTPALQ9BTX7 342 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 NMUR1Q9HB89 426 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 USP29Q9HBJ7 922 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 ARHGEF4Q9NR80 690 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 RRN3Q9NYV6 651 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 FBXW11Q9UKB1 542 aa14.31□□□□□ -0.12
PTPRF-202ENST00000372405 MTMR11A4FU01 709 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 ADAM12O43184 909 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 RNF40O75150 1001 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 RPL22P35268 128 aaKnown RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 MAGEA11P43364 429 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 CXCR3P49682 368 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 GYS2P54840 703 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 ARPP19P56211 112 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 YWHAGP61981 247 aaKnown RBP eCLIP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 SEMA3BQ13214 749 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 GPR17Q13304 367 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 MTMR3Q13615 1198 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 PKN2Q16513 984 aaKnown RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 HSP90B2PQ58FF3 399 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 RNF19BQ6ZMZ0 732 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 CCHCR1Q8TD31 782 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 GPR152Q8TDT2 470 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms