RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 NUP62CLQ9H1M0 184 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 KCNF1Q9H3M0 494 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 FAM124BQ9H5Z6 455 aaPredicted RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 CCSER2Q9H7U1 834 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 KIAA1586Q9HCI6 787 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 DNAAF2Q9NVR5 837 aaKnown RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 TFIP11Q9UBB9 837 aaKnown RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 NXF1Q9UBU9 619 aaKnown RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 SUSD2Q9UGT4 822 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 FBXO2Q9UK22 296 aaPredicted RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 CYP8B1Q9UNU6 501 aa8.29□□□□□ -1.08
CLK1-215ENST00000621181 SRPRBQ9Y5M8 271 aaKnown RBP8.29□□□□□ -1.08
CLK1-215ENST00000621181 ITPR1Q14643 2758 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 PCDH15Q96QU1 1955 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 APC2O95996 2303 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 A0A1W2PQF6 199 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 FAM221BA6H8Z2 402 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 TRIM24O15164 1050 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 SH3BP5O60239 455 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 CST3P01034 146 aaPredicted RBP8.28□□□□□ -1.08
CLK1-215ENST00000621181 SLC5A3P53794 718 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 SCAPQ12770 1279 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 TRPC3Q13507 836 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 EGFLAMQ63HQ2 1017 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 GRAMD4Q6IC98 578 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 SASS6Q6UVJ0 657 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 KIAA1524Q8TCG1 905 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 IPO4Q8TEX9 1081 aaKnown RBP8.28□□□□□ -1.08
CLK1-215ENST00000621181 SCFD1Q8WVM8 642 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 FOXJ1Q92949 421 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 CCDC127Q96BQ5 260 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 SPATA32Q96LK8 384 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 ZNF830Q96NB3 372 aaPredicted RBP8.28□□□□□ -1.08
CLK1-215ENST00000621181 XPO6Q96QU8 1125 aaKnown RBP8.28□□□□□ -1.08
CLK1-215ENST00000621181 MED10Q9BTT4 135 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 BBS2Q9BXC9 721 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 B3GNT5Q9BYG0 378 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 ZSCAN16Q9H4T2 348 aaPredicted RBP8.28□□□□□ -1.08
CLK1-215ENST00000621181 RCOR1Q9UKL0 485 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 GPSM3Q9Y4H4 160 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 NME7Q9Y5B8 376 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 MYH10P35580 1976 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 ATP8B3O60423 1300 aa8.28□□□□□ -1.08
CLK1-215ENST00000621181 PTMAP06454 111 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 FTH1P19P0C7X4 201 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 TYRP14679 529 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 GOLGA8FQ08AF8 430 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 GOLGA8DPQ0D2H9 430 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 C19orf48Q6RUI8 117 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 KIAA1324Q6UXG2 1013 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 TPGS1Q6ZTW0 290 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 FAM35AQ86V20 835 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 NAXDQ8IW45 347 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 PDILTQ8N807 584 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 PNPLA1Q8N8W4 532 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 GLIS3Q8NEA6 775 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 HPS3Q969F9 1004 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 SMARCD1Q96GM5 515 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 MRGPRX1Q96LB2 322 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 ACOX2Q99424 681 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 DUSP9Q99956 384 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 CCDC86Q9H6F5 360 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 DMAP1Q9NPF5 467 aaPredicted RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 PLSCR2Q9NRY7 297 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 GMIPQ9P107 970 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 STARD13Q9Y3M8 1113 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 KNL1Q8NG31 2342 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 GOLGA4Q13439 2230 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 ASXL3Q9C0F0 2248 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 ADAMTS20P59510 1910 aa8.27□□□□□ -1.09
CLK1-215ENST00000621181 URB1O60287 2271 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 SMG1Q96Q15 3661 aaKnown RBP8.27□□□□□ -1.09
CLK1-215ENST00000621181 MEI4A8MW99 385 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 DYNC1I1O14576 645 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CACNG3O60359 315 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 TLR5O60602 858 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 PHACTR2O75167 634 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 FAM163BP0C2L3 166 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 MAOBP27338 520 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CYP2J2P51589 502 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 MYL6P60660 151 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 WDR45BQ5MNZ6 344 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 SNX30Q5VWJ9 437 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 ADAMTS14Q8WXS8 1223 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 BHMTQ93088 406 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 MARVELD3Q96A59 401 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 ZNF419Q96HQ0 510 aaPredicted RBP8.26□□□□□ -1.09
CLK1-215ENST00000621181 TNIP3Q96KP6 325 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CGRRF1Q99675 332 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 SLC6A17Q9H1V8 727 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CBX8Q9HC52 389 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CD93Q9NPY3 652 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 AGPAT3Q9NRZ7 376 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 KRT82Q9NSB4 513 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 CACNA2D2Q9NY47 1150 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 HCN2Q9UL51 889 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 APOBEC2Q9Y235 224 aaKnown RBP8.26□□□□□ -1.09
CLK1-215ENST00000621181 RAD54BQ9Y620 910 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 A0A087X0B3 334 aa8.26□□□□□ -1.09
CLK1-215ENST00000621181 UQCRHLA0A096LP55 91 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms