RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ARNTL2Q8WYA1 636 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TOP1MTQ969P6 601 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MCEEQ96PE7 176 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MRPL9Q9BYD2 267 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 VCXQ9H320 206 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 BATF3Q9NR55 127 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PCSK1NQ9UHG2 260 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SALL4Q9UJQ4 1053 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 DERAQ9Y315 318 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 E5RJQ4 531 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 F8VP50 259 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SUPT3HO75486 399 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CA3P07451 260 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 LINGO3P0C6S8 592 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 NQO1P15559 274 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 GPR15P49685 360 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SKOR1P84550 965 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MTM1Q13496 603 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TRIP13Q15645 432 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 RTP2Q5QGT7 225 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TMEM240Q5SV17 173 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SIX6OS1Q8N1H7 587 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TAB3Q8N5C8 712 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 TTC9BQ8N6N2 239 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC35G2Q8TBE7 412 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ADAM32Q8TC27 787 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 CLEC4CQ8WTT0 213 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 KBTBD7Q8WVZ9 684 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 ITFG2Q969R8 447 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 MYLPFQ96A32 169 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SEZ6LQ9BYH1 1024 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 NGRNQ9NPE2 291 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 STXBP5LQ9Y2K9 1186 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 PCDHB12Q9Y5F1 795 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SQORQ9Y6N5 450 aa9.04□□□□□ -0.96
LIMCH1-209ENST00000509277 SSU72P8A0A1W2PR75 194 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 CAPN9O14815 690 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PER2O15055 1255 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ENTPD5O75356 428 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SETSIPP0DME0 302 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ATXN8OSP0DMR3 200 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PCSK1P29120 753 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 COG7P83436 770 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ZBTB16Q05516 673 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF844Q08AG5 666 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 TAF5Q15542 800 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 OR10T2Q8NGX3 314 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 BCL7CQ8WUZ0 217 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 EDEM1Q92611 657 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PCED1BQ96HM7 432 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 C17orf80Q9BSJ5 609 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PHACTR1Q9C0D0 580 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 DNAI2Q9GZS0 605 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SCOCQ9UIL1 159 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 NOCTQ9UK39 431 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 NME7Q9Y5B8 376 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 UNC80Q8N2C7 3258 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SF3B1O75533 1304 aaKnown RBP eCLIP9.03□□□□□ -0.961e-8■■■■■ 160.4
LIMCH1-209ENST00000509277 ANO9A1A5B4 782 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 RFXAPO00287 272 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PRRG1O14668 218 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SART1O43290 800 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 LUC7L3O95232 432 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 STX2P32856 288 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 RPL9P32969 192 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PBX2P40425 430 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 NDUFV1P49821 464 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 BTKQ06187 659 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ADIGQ0VDE8 80 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 DUSP4Q13115 394 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SPATA21Q7Z572 469 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 WHAMMQ8TF30 809 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 RNF34Q969K3 372 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 CPXM1Q96SM3 734 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 IGFLR1Q9H665 355 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 CYP3A43Q9HB55 503 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 CYP4F11Q9HBI6 524 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 HAO1Q9UJM8 370 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 UTP11Q9Y3A2 253 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 FRMPD3Q5JV73 1810 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SZT2Q5T011 3432 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ANK1P16157 1881 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 DGKIO75912 1065 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 SMNDC1O75940 238 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 BEST1O76090 585 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 URODP06132 367 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM200BP0CF97 657 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 VDRP11473 427 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 KRT17Q04695 432 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 KLC1Q07866 573 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 NAB2Q15742 525 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 P3H1Q32P28 736 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PEX26Q7Z412 305 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 KLHL23Q8NBE8 558 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF564Q8TBZ8 553 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 C18orf8Q96DM3 657 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM81BQ96LP2 452 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 PHF12Q96QT6 1004 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 NACA2Q9H009 215 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms