RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 FAM83CQ9BQN1 747 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 FOXQ1Q9C009 403 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 LINC00597Q9H2U6 94 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 TRPV5Q9NQA5 729 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 CNGB3Q9NQW8 809 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 DUS2Q9NX74 493 aaKnown RBP14.03□□□□□ -0.16
VPS28-210ENST00000529182 CLIC5Q9NZA1 410 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 PIAS3Q9Y6X2 628 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 COL4A2P08572 1712 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 TICRRQ7Z2Z1 1910 aa14.03□□□□□ -0.16
VPS28-210ENST00000529182 HELZP42694 1942 aaKnown RBP14.02□□□□□ -0.16
VPS28-210ENST00000529182 KIF26AQ9ULI4 1882 aaPredicted RBP14.02□□□□□ -0.16
VPS28-210ENST00000529182 E5RJQ4 531 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 PI15O43692 258 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 RALAP11233 206 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 SOX5P35711 763 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 STAT1P42224 750 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 IFNAR2P48551 515 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 RPL34P49207 117 aaKnown RBP14.02□□□□□ -0.17
VPS28-210ENST00000529182 KPNA1P52294 538 aaPredicted RBP14.02□□□□□ -0.17
VPS28-210ENST00000529182 STARD6P59095 220 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 PRKCQQ04759 706 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 EFEMP1Q12805 493 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 NR1I3Q14994 352 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 BSPRYQ5W0U4 402 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 BTBD8Q5XKL5 378 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 SMYD5Q6GMV2 418 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 MIB1Q86YT6 1006 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 ARHGAP18Q8N392 663 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 EPS8L1Q8TE68 723 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 SLC20A1Q8WUM9 679 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 DDX1Q92499 740 aaKnown RBP14.02□□□□□ -0.17
VPS28-210ENST00000529182 CPXM1Q96SM3 734 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 KLF16Q9BXK1 252 aaPredicted RBP14.02□□□□□ -0.17
VPS28-210ENST00000529182 SLC4A5Q9BY07 1137 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 RASAL2Q9UJF2 1139 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 DNMT3LQ9UJW3 386 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 MTF2Q9Y483 593 aaPredicted RBP14.02□□□□□ -0.17
VPS28-210ENST00000529182 WDFY4Q6ZS81 3184 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 F5P12259 2224 aa14.02□□□□□ -0.17
VPS28-210ENST00000529182 PAPSS1O43252 624 aaPredicted RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 HMBSP08397 361 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 MMEP08473 750 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 UBASH3AP57075 661 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 RUNX3Q13761 415 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 PDGFRLQ15198 375 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 EML3Q32P44 896 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 ITPRIPL2Q3MIP1 535 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 RSRC2Q7L4I2 434 aaKnown RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 DDX42Q86XP3 938 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS28-210ENST00000529182 SUGP1Q8IWZ8 645 aaKnown RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 SCML4Q8N228 414 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 STK32AQ8WU08 396 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 SHDQ96IW2 340 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 PIWIL1Q96J94 861 aaKnown RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 DDX23Q9BUQ8 820 aaKnown RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 LHX5Q9H2C1 402 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 PDCL3Q9H2J4 239 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 NOCTQ9UK39 431 aaKnown RBP14.01□□□□□ -0.17
VPS28-210ENST00000529182 DAAM1Q9Y4D1 1078 aa14.01□□□□□ -0.17
VPS28-210ENST00000529182 A0A1W2PQC6 194 aa14□□□□□ -0.17
VPS28-210ENST00000529182 SPECC1L-ADORA2AF8WAN1 911 aa14□□□□□ -0.17
VPS28-210ENST00000529182 FBXO21O94952 628 aa14□□□□□ -0.17
VPS28-210ENST00000529182 LTFP02788 710 aa14□□□□□ -0.17
VPS28-210ENST00000529182 ACADSBP45954 432 aa14□□□□□ -0.17
VPS28-210ENST00000529182 ZNF445P59923 1031 aa14□□□□□ -0.17
VPS28-210ENST00000529182 ARID5AQ03989 594 aa14□□□□□ -0.17
VPS28-210ENST00000529182 UBXN2BQ14CS0 331 aa14□□□□□ -0.17
VPS28-210ENST00000529182 NAIF1Q69YI7 327 aaPredicted RBP14□□□□□ -0.17
VPS28-210ENST00000529182 ASTLQ6HA08 431 aaPredicted RBP14□□□□□ -0.17
VPS28-210ENST00000529182 KLHDC10Q6PID8 442 aa14□□□□□ -0.17
VPS28-210ENST00000529182 TXNDC11Q6PKC3 985 aa14□□□□□ -0.17
VPS28-210ENST00000529182 CACNA2D4Q7Z3S7 1137 aa14□□□□□ -0.17
VPS28-210ENST00000529182 TADA2BQ86TJ2 420 aa14□□□□□ -0.17
VPS28-210ENST00000529182 TMEM110Q86TL2 294 aa14□□□□□ -0.17
VPS28-210ENST00000529182 BBS7Q8IWZ6 715 aa14□□□□□ -0.17
VPS28-210ENST00000529182 ZNF276Q8N554 614 aa14□□□□□ -0.17
VPS28-210ENST00000529182 TMEM105Q8N8V8 129 aa14□□□□□ -0.17
VPS28-210ENST00000529182 IRGQQ8WZA9 623 aa14□□□□□ -0.17
VPS28-210ENST00000529182 CHFRQ96EP1 664 aa14□□□□□ -0.17
VPS28-210ENST00000529182 PPP1R13BQ96KQ4 1090 aa14□□□□□ -0.17
VPS28-210ENST00000529182 CDK5RAP1Q96SZ6 601 aaKnown RBP14□□□□□ -0.17
VPS28-210ENST00000529182 LTB4R2Q9NPC1 389 aa14□□□□□ -0.17
VPS28-210ENST00000529182 ABCC13Q9NSE7 274 aa14□□□□□ -0.17
VPS28-210ENST00000529182 IFNKQ9P0W0 207 aa14□□□□□ -0.17
VPS28-210ENST00000529182 NDRG2Q9UN36 371 aaKnown RBP14□□□□□ -0.17
VPS28-210ENST00000529182 SH3BP1Q9Y3L3 701 aa14□□□□□ -0.17
VPS28-210ENST00000529182 KANSL1LA0AUZ9 987 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 SLC12A8A0AV02 714 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 GREM1O60565 184 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 ERBB2P04626 1255 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 FYNP06241 537 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 DCNP07585 359 aaKnown RBP13.99□□□□□ -0.17
VPS28-210ENST00000529182 CHRNB2P17787 502 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 AOC1P19801 751 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 TARSP26639 723 aaKnown RBP13.99□□□□□ -0.17
VPS28-210ENST00000529182 AVPR2P30518 371 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 CTHP32929 405 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 PBX1P40424 430 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 TAF5Q15542 800 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms