RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 USP8P40818 1118 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 TKTL1P51854 596 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 BCAT1P54687 386 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 VCPP55072 806 aaKnown RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 ZNF445P59923 1031 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 PITX1P78337 314 aaPredicted RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 SLC7A9P82251 487 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 FANCCQ00597 558 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 UBXN1Q04323 297 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 SIGLEC14Q08ET2 396 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 ADIGQ0VDE8 80 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 MESP2Q0VG99 397 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 BST2Q10589 180 aaKnown RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 FZD5Q13467 585 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 RAPGEF1Q13905 1077 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 TAF5Q15542 800 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 TAF12Q16514 161 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 C2CD6Q53TS8 623 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CCDC186Q7Z3E2 898 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 ALYREFQ86V81 257 aaKnown RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 DNAAF5Q86Y56 855 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 RNF214Q8ND24 703 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 KCTD13Q8WZ19 329 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CPXM1Q96SM3 734 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 FAM83CQ9BQN1 747 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 SYT11Q9BT88 431 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 KLF16Q9BXK1 252 aaPredicted RBP9.71□□□□□ -0.86
VPS35-206ENST00000565228 SLC4A5Q9BY07 1137 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 STK33Q9BYT3 514 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 UBXN6Q9BZV1 441 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 SLITRK6Q9H5Y7 841 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 PNPLA8Q9NP80 782 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 HEBP1Q9NRV9 189 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS35-206ENST00000565228 SMPD4Q9NXE4 827 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 GTSE1Q9NYZ3 720 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CA14Q9ULX7 337 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CPQQ9Y646 472 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 CACNA1IQ9P0X4 2223 aa9.71□□□□□ -0.86
VPS35-206ENST00000565228 SMTNL1A8MU46 457 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 LEFTY2O00292 366 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 PAPSS1O43252 624 aaPredicted RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 THAP12O43422 761 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 GPR37L1O60883 481 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 GFPT2O94808 682 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 ABL1P00519 1130 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 KLKB1P03952 638 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 ERBB2P04626 1255 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 MMEP08473 750 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 LCP1P13796 627 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 CYP11B1P15538 503 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 PSMC3P17980 439 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 HDCP19113 662 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 PTMSP20962 102 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 CDK11BP21127 795 aaKnown RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 DAOAP59103 153 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 YWHAEP62258 255 aaKnown RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 FMO1Q01740 532 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 PTPN20Q4JDL3 420 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TAF3Q5VWG9 929 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TRNP1Q6NT89 227 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 MTSS1LQ765P7 747 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 ENOSF1Q7L5Y1 443 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TTC39CQ8N584 583 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 C1orf131Q8NDD1 294 aaKnown RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 EPS8L1Q8TE68 723 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 SH3RF2Q8TEC5 729 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 MRPS31Q92665 395 aaKnown RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 EZH1Q92800 747 aaPredicted RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 FOXQ1Q9C009 403 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 RBSNQ9H1K0 784 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 FBRSL1Q9HCM7 1045 aaKnown RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 CYLDQ9NQC7 956 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TDP1Q9NUW8 608 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 COMMD8Q9NX08 183 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TRPM5Q9NZQ8 1165 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 CALCOCO1Q9P1Z2 691 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 UXTQ9UBK9 157 aaPredicted RBP9.7□□□□□ -0.86
VPS35-206ENST00000565228 KIAA1257Q9ULG3 409 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 PCDHGC3Q9UN70 934 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 ARHGAP26Q9UNA1 814 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 WNT6Q9Y6F9 365 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 ATP8B3O60423 1300 aa9.7□□□□□ -0.86
VPS35-206ENST00000565228 TRAV19A0A0A6YYK7 116 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 E5RJQ4 531 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 FGF19O95750 216 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 SETSIPP0DME0 302 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 RARGP13631 454 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 ALADP13716 330 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 TCF3P15923 654 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 DDX6P26196 483 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS35-206ENST00000565228 CDH5P33151 784 aaPredicted RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 SOX5P35711 763 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 GOLGA8FQ08AF8 430 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 GOLGA8DPQ0D2H9 430 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 PDCLQ13371 301 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 ZNF268Q14587 947 aaPredicted RBP9.69□□□□□ -0.86
VPS35-206ENST00000565228 EML3Q32P44 896 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 SLC44A4Q53GD3 710 aa9.69□□□□□ -0.86
VPS35-206ENST00000565228 ARHGAP15Q53QZ3 475 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms