RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GOLGA8DPQ0D2H9 430 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 SF3A1Q15459 793 aaKnown RBP17.97■□□□□ 0.47
VPS29-204ENST00000548259 GRAMD4Q6IC98 578 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 C19orf48Q6RUI8 117 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 PHTF2Q8N3S3 785 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 ZSWIM2Q8NEG5 633 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 CYP8B1Q9UNU6 501 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 SMC3Q9UQE7 1217 aa17.97■□□□□ 0.47
VPS29-204ENST00000548259 GON4LQ3T8J9 2241 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 WDFY3Q8IZQ1 3526 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 COCHO43405 550 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 FTH1P19P0C7X4 201 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 GRIN1Q05586 938 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 LARP1BQ659C4 914 aaKnown RBP17.96■□□□□ 0.47
VPS29-204ENST00000548259 CCNI2Q6ZMN8 369 aaPredicted RBP17.96■□□□□ 0.47
VPS29-204ENST00000548259 CCDC73Q6ZRK6 1079 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 CCDC65Q8IXS2 484 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 OR5B17Q8NGF7 314 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 IPO4Q8TEX9 1081 aaKnown RBP17.96■□□□□ 0.47
VPS29-204ENST00000548259 EPSTI1Q96J88 318 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 DNAJC17Q9NVM6 304 aaKnown RBP17.96■□□□□ 0.47
VPS29-204ENST00000548259 WDR35Q9P2L0 1181 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 NBEAQ8NFP9 2946 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 MYO16Q9Y6X6 1858 aa17.96■□□□□ 0.47
VPS29-204ENST00000548259 ITPR1Q14643 2758 aa17.96■□□□□ 0.46
VPS29-204ENST00000548259 FREM2Q5SZK8 3169 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 A8MXQ7 604 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 WASP42768 502 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 RABEP1Q15276 862 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 TRAPPC11Q7Z392 1133 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 SLC41A1Q8IVJ1 513 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 OR2I1PQ8NGU4 316 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 DNAJC19Q96DA6 116 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 ZNF419Q96HQ0 510 aaPredicted RBP17.95■□□□□ 0.46
VPS29-204ENST00000548259 FAM84AQ96KN4 292 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.95■□□□□ 0.46
VPS29-204ENST00000548259 PANK4Q9NVE7 773 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 COMMD8Q9NX08 183 aa17.95■□□□□ 0.46
VPS29-204ENST00000548259 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.95■□□□□ 0.46
VPS29-204ENST00000548259 A0A1W2PQF6 199 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 GFRA2O00451 464 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 CAPNS1P04632 268 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 TNNI1P19237 187 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 NDUFV2P19404 249 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 CASP5P51878 434 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 TRPC3Q13507 836 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 E2F5Q15329 346 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 COL28A1Q2UY09 1125 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 WDR72Q3MJ13 1102 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 SNX30Q5VWJ9 437 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 SCARA3Q6AZY7 606 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 TMEM25Q86YD3 366 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 BBS7Q8IWZ6 715 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 B3GALNT2Q8NCR0 500 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 CAMK1GQ96NX5 476 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 MRPL45Q9BRJ2 306 aaKnown RBP17.94■□□□□ 0.46
VPS29-204ENST00000548259 MED10Q9BTT4 135 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 ZNF518BQ9C0D4 1074 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 CHORDC1Q9UHD1 332 aaPredicted RBP17.94■□□□□ 0.46
VPS29-204ENST00000548259 LSM7Q9UK45 103 aaKnown RBP17.94■□□□□ 0.46
VPS29-204ENST00000548259 NFE2L3Q9Y4A8 694 aa17.94■□□□□ 0.46
VPS29-204ENST00000548259 A0A1B0GTW7 788 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 MEI4A8MW99 385 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 DLATP10515 647 aaKnown RBP17.93■□□□□ 0.46
VPS29-204ENST00000548259 STAT6P42226 847 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 STARD3Q14849 445 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 EGFLAMQ63HQ2 1017 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 IL27RAQ6UWB1 636 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 KIAA1324Q6UXG2 1013 aaKnown RBP17.93■□□□□ 0.46
VPS29-204ENST00000548259 GLRX5Q86SX6 157 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 CBWD2Q8IUF1 395 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 PNPLA1Q8N8W4 532 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 SETD7Q8WTS6 366 aaKnown RBP17.93■□□□□ 0.46
VPS29-204ENST00000548259 TMX3Q96JJ7 454 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 TNIP3Q96KP6 325 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 ZFRQ96KR1 1074 aaKnown RBP17.93■□□□□ 0.46
VPS29-204ENST00000548259 KIF2CQ99661 725 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 BBS2Q9BXC9 721 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 LRRC27Q9C0I9 530 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 DMAP1Q9NPF5 467 aaPredicted RBP17.93■□□□□ 0.46
VPS29-204ENST00000548259 PPP4R2Q9NY27 417 aa17.93■□□□□ 0.46
VPS29-204ENST00000548259 HELZP42694 1942 aaKnown RBP17.92■□□□□ 0.46
VPS29-204ENST00000548259 ANAPC1Q9H1A4 1944 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 PI4KAP42356 2102 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 NEDD8-MDP1E9PL57 170 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 CACNG3O60359 315 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 GJB3O75712 270 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 CLSTN1O94985 981 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 CER1O95813 267 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 IRF1P10914 325 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 CD6P30203 668 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 GRIK2Q13002 908 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 SOWAHCQ53LP3 525 aaPredicted RBP17.92■□□□□ 0.46
VPS29-204ENST00000548259 TOGARAM2Q6ZUX3 1019 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 SYAP1Q96A49 352 aaPredicted RBP17.92■□□□□ 0.46
VPS29-204ENST00000548259 CDC6Q99741 560 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 GABRG3Q99928 467 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 B3GNT5Q9BYG0 378 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 FBXO44Q9H4M3 255 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 HSPBP1Q9NZL4 362 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms