RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 DLGAP5Q15398 846 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 LY6KQ17RY6 165 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 FSTL5Q8N475 847 aaPredicted RBP8.41□□□□□ -1.06
NUP54-215ENST00000514313 C11orf44Q8N8P7 122 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 TWNKQ96RR1 684 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 HAPLN3Q96S86 360 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 VN1R3Q9BXE9 311 aa8.41□□□□□ -1.06
NUP54-215ENST00000514313 INO80BQ9C086 356 aaPredicted RBP8.41□□□□□ -1.06
NUP54-215ENST00000514313 OTOL1A6NHN0 477 aaPredicted RBP8.4□□□□□ -1.06
NUP54-215ENST00000514313 KIF28PB7ZC32 967 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 NCR1O76036 304 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 RECQL4O94761 1208 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 VNN1O95497 513 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 ERBB2P04626 1255 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 PDHA1P08559 390 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 MTHFSP49914 203 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 RPS6KA2Q15349 733 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 UBXN11Q5T124 520 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 SLC9A4Q6AI14 798 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 MSANTD2Q6P1R3 559 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 TTC30AQ86WT1 665 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 IZUMO1Q8IYV9 350 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 METTL25Q8N6Q8 603 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 MCRS1Q96EZ8 462 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 ALOXE3Q9BYJ1 711 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 AMBRA1Q9C0C7 1298 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 RASSF1Q9NS23 344 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 TMEM160Q9NX00 188 aa8.4□□□□□ -1.06
NUP54-215ENST00000514313 KRTAP23-1A1A580 65 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ZAR1LA6NP61 321 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 E7EVH7 732 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 PPM1DO15297 605 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 PAX4O43316 350 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 PRICKLE3O43900 615 aaPredicted RBP8.39□□□□□ -1.07
NUP54-215ENST00000514313 CER1O95813 267 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ATP1A3P13637 1013 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 PPP3CBP16298 524 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 SERPINA4P29622 427 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ELF1P32519 619 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ZEB1P37275 1124 aaPredicted RBP8.39□□□□□ -1.07
NUP54-215ENST00000514313 RXRGP48443 463 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 VAV2P52735 878 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ADAM17P78536 824 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 SMAD1Q15797 465 aaKnown RBP8.39□□□□□ -1.07
NUP54-215ENST00000514313 GALNTL6Q49A17 601 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 TICAM2Q86XR7 235 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 TMEM57Q8N5G2 664 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 PCYOX1LQ8NBM8 494 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 CPT1BQ92523 772 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ACTRT3Q9BYD9 372 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 XYLT2Q9H1B5 865 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 CHODLQ9H9P2 273 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 NDUFAF4Q9P032 175 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 KCND3Q9UK17 655 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 NOX1Q9Y5S8 564 aa8.39□□□□□ -1.07
NUP54-215ENST00000514313 ZNF623O75123 536 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 C8AP07357 584 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 KRT9P35527 623 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 PBX1P40424 430 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 TIRAPP58753 221 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 CHRNDQ07001 517 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 SF3A3Q12874 501 aaKnown RBP eCLIP8.38□□□□□ -1.07
NUP54-215ENST00000514313 TMEM196Q5HYL7 178 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 MAP3K21Q5TCX8 1036 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 SP5Q6BEB4 398 aaPredicted RBP8.38□□□□□ -1.07
NUP54-215ENST00000514313 FAAH2Q6GMR7 532 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 SYT13Q7L8C5 426 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 ANKS1BQ7Z6G8 1248 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 TRABD2AQ86V40 505 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 SYNE4Q8N205 404 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 HMGB4Q8WW32 186 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 BOD1Q96IK1 185 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 TTPALQ9BTX7 342 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 MECRQ9BV79 373 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 TPSD1Q9BZJ3 242 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 AKIP1Q9NQ31 210 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 INTS13Q9NVM9 706 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 JAG2Q9Y219 1238 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 SCINQ9Y6U3 715 aa8.38□□□□□ -1.07
NUP54-215ENST00000514313 TRGV11A0A075B6L2 103 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 EFCAB8A8MWE9 144 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 RNASET2O00584 256 aaKnown RBP8.37□□□□□ -1.07
NUP54-215ENST00000514313 WDR47O94967 919 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 MAGEA10P43363 369 aaPredicted RBP8.37□□□□□ -1.07
NUP54-215ENST00000514313 ATXN1P54253 815 aaKnown RBP8.37□□□□□ -1.07
NUP54-215ENST00000514313 NR1H2P55055 460 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 MAPK7Q13164 816 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 CLCA4Q14CN2 919 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 ACOX1Q15067 660 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 P3H1Q32P28 736 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 SPDYE7PQ495Y7 208 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 RABL3Q5HYI8 236 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 PIK3AP1Q6ZUJ8 805 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 TBC1D1Q86TI0 1168 aaPredicted RBP8.37□□□□□ -1.07
NUP54-215ENST00000514313 WWC2-AS2Q96NR7 200 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 GALNT9Q9HCQ5 603 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 TMEM74BQ9NUR3 256 aa8.37□□□□□ -1.07
NUP54-215ENST00000514313 DRG1Q9Y295 367 aaKnown RBP8.37□□□□□ -1.07
NUP54-215ENST00000514313 FAM90A20PA6NIJ5 464 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 PRSS47A8MTI9 375 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms