RNA–Protein interactions for RNA: ENST00000590180.1

TPM4-212, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-212ENST00000590180 PRAM1Q96QH2 718 aa17.48■□□□□ 0.39
TPM4-212ENST00000590180 MED1Q15648 1581 aaPredicted RBP17.48■□□□□ 0.39
TPM4-212ENST00000590180 PHLPP1O60346 1717 aa17.47■□□□□ 0.39
TPM4-212ENST00000590180 LRRC59Q96AG4 307 aaKnown RBP17.47■□□□□ 0.39
TPM4-212ENST00000590180 C1orf167Q5SNV9 1468 aa17.47■□□□□ 0.39
TPM4-212ENST00000590180 TECPR2O15040 1411 aa17.47■□□□□ 0.39
TPM4-212ENST00000590180 ASXL1Q8IXJ9 1541 aa17.46■□□□□ 0.39
TPM4-212ENST00000590180 NALCNQ8IZF0 1738 aa17.45■□□□□ 0.38
TPM4-212ENST00000590180 NUTM2BA6NNL0 878 aaPredicted RBP17.44■□□□□ 0.38
TPM4-212ENST00000590180 NUTM2EB1AL46 878 aaPredicted RBP17.44■□□□□ 0.38
TPM4-212ENST00000590180 NUTM2AQ8IVF1 878 aaPredicted RBP17.44■□□□□ 0.38
TPM4-212ENST00000590180 MEX3CQ5U5Q3 659 aaKnown RBP17.43■□□□□ 0.38
TPM4-212ENST00000590180 L3MBTL2Q969R5 705 aa17.43■□□□□ 0.38
TPM4-212ENST00000590180 AHDC1Q5TGY3 1603 aaPredicted RBP17.41■□□□□ 0.38
TPM4-212ENST00000590180 FOXO3O43524 673 aa17.41■□□□□ 0.38
TPM4-212ENST00000590180 SPATA31A6Q5VVP1 1343 aa17.41■□□□□ 0.38
TPM4-212ENST00000590180 HIRIP3Q9BW71 556 aaPredicted RBP17.4■□□□□ 0.38
TPM4-212ENST00000590180 RGS17Q9UGC6 210 aaPredicted RBP17.4■□□□□ 0.38
TPM4-212ENST00000590180 MINK1Q8N4C8 1332 aaPredicted RBP17.4■□□□□ 0.38
TPM4-212ENST00000590180 LAMC1P11047 1609 aa17.39■□□□□ 0.38
TPM4-212ENST00000590180 COL16A1Q07092 1604 aaPredicted RBP17.39■□□□□ 0.38
TPM4-212ENST00000590180 NBPF1Q3BBV0 1214 aa17.39■□□□□ 0.37
TPM4-212ENST00000590180 XPCQ01831 940 aaPredicted RBP17.38■□□□□ 0.37
TPM4-212ENST00000590180 KNDC1Q76NI1 1749 aa17.37■□□□□ 0.37
TPM4-212ENST00000590180 SOS2Q07890 1332 aaPredicted RBP17.37■□□□□ 0.37
TPM4-212ENST00000590180 NPHP3Q7Z494 1330 aa17.37■□□□□ 0.37
TPM4-212ENST00000590180 ADGRB1O14514 1584 aa17.36■□□□□ 0.37
TPM4-212ENST00000590180 PHF8Q9UPP1 1060 aa17.36■□□□□ 0.37
TPM4-212ENST00000590180 CDC42BPGQ6DT37 1551 aa17.36■□□□□ 0.37
TPM4-212ENST00000590180 SOCS7O14512 581 aa17.35■□□□□ 0.37
TPM4-212ENST00000590180 DLC1Q96QB1 1528 aa17.35■□□□□ 0.37
TPM4-212ENST00000590180 WASLO00401 505 aaPredicted RBP17.33■□□□□ 0.36
TPM4-212ENST00000590180 POTEAQ6S8J7 498 aa17.33■□□□□ 0.36
TPM4-212ENST00000590180 KRT28Q7Z3Y7 464 aa17.33■□□□□ 0.36
TPM4-212ENST00000590180 PMFBP1Q8TBY8 1022 aa17.33■□□□□ 0.36
TPM4-212ENST00000590180 PNPLA6Q8IY17 1366 aa17.32■□□□□ 0.36
TPM4-212ENST00000590180 PSME1Q06323 249 aa17.32■□□□□ 0.36
TPM4-212ENST00000590180 NHSL1Q5SYE7 1610 aa17.32■□□□□ 0.36
TPM4-212ENST00000590180 ADAMTS2O95450 1211 aa17.31■□□□□ 0.36
TPM4-212ENST00000590180 LRP6O75581 1613 aa17.29■□□□□ 0.36
TPM4-212ENST00000590180 ZNF772Q68DY9 489 aaPredicted RBP17.29■□□□□ 0.36
TPM4-212ENST00000590180 C8orf37Q96NL8 207 aa17.29■□□□□ 0.36
TPM4-212ENST00000590180 CDK19Q9BWU1 502 aa17.29■□□□□ 0.36
TPM4-212ENST00000590180 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
TPM4-212ENST00000590180 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
TPM4-212ENST00000590180 NGLY1Q96IV0 654 aa17.28■□□□□ 0.36
TPM4-212ENST00000590180 SHPRHQ149N8 1683 aa17.28■□□□□ 0.36
TPM4-212ENST00000590180 FMN2Q9NZ56 1722 aa17.27■□□□□ 0.36
TPM4-212ENST00000590180 PLEKHG5O94827 1062 aa17.27■□□□□ 0.36
TPM4-212ENST00000590180 NGDNQ8NEJ9 315 aaKnown RBP17.27■□□□□ 0.36
TPM4-212ENST00000590180 NUDT16Q96DE0 195 aaKnown RBP17.27■□□□□ 0.36
TPM4-212ENST00000590180 EIF3AQ14152 1382 aaKnown RBP17.27■□□□□ 0.35
TPM4-212ENST00000590180 TONSLQ96HA7 1378 aa17.27■□□□□ 0.35
TPM4-212ENST00000590180 NBPF8Q3BBV2 869 aa17.26■□□□□ 0.35
TPM4-212ENST00000590180 AFF2P51816 1311 aa17.25■□□□□ 0.35
TPM4-212ENST00000590180 SPATA31A3Q5VYP0 1347 aa17.25■□□□□ 0.35
TPM4-212ENST00000590180 PRR36Q9H6K5 1346 aa17.25■□□□□ 0.35
TPM4-212ENST00000590180 CENPJQ9HC77 1338 aaPredicted RBP17.25■□□□□ 0.35
TPM4-212ENST00000590180 ANKARQ7Z5J8 1434 aa17.25■□□□□ 0.35
TPM4-212ENST00000590180 ROCK2O75116 1388 aaKnown RBP17.24■□□□□ 0.35
TPM4-212ENST00000590180 KIAA1210Q9ULL0 1709 aa17.24■□□□□ 0.35
TPM4-212ENST00000590180 PXDNQ92626 1479 aa17.24■□□□□ 0.35
TPM4-212ENST00000590180 HAP1P54257 671 aaPredicted RBP17.23■□□□□ 0.35
TPM4-212ENST00000590180 SRPK2P78362 688 aaKnown RBP17.23■□□□□ 0.35
TPM4-212ENST00000590180 RGPD8O14715 1765 aaPredicted RBP17.23■□□□□ 0.35
TPM4-212ENST00000590180 QTRT2Q9H974 415 aaKnown RBP17.22■□□□□ 0.35
TPM4-212ENST00000590180 GPRASP1Q5JY77 1395 aa17.22■□□□□ 0.35
TPM4-212ENST00000590180 PAK3O75914 559 aaPredicted RBP17.21■□□□□ 0.35
TPM4-212ENST00000590180 RXRBP28702 533 aa17.21■□□□□ 0.35
TPM4-212ENST00000590180 CCDC61Q9Y6R9 512 aa17.21■□□□□ 0.35
TPM4-212ENST00000590180 CABLES1Q8TDN4 633 aa17.2■□□□□ 0.34
TPM4-212ENST00000590180 CABP2Q9NPB3 220 aa17.2■□□□□ 0.34
TPM4-212ENST00000590180 KIF1AQ12756 1690 aa17.2■□□□□ 0.34
TPM4-212ENST00000590180 ADGRB2O60241 1585 aa17.19■□□□□ 0.34
TPM4-212ENST00000590180 ARHGEF28Q8N1W1 1705 aaKnown RBP17.19■□□□□ 0.34
TPM4-212ENST00000590180 SBNO1A3KN83 1393 aa17.19■□□□□ 0.34
TPM4-212ENST00000590180 CARD11Q9BXL7 1154 aa17.19■□□□□ 0.34
TPM4-212ENST00000590180 USP21Q9UK80 565 aa17.19■□□□□ 0.34
TPM4-212ENST00000590180 TULP4Q9NRJ4 1543 aa17.18■□□□□ 0.34
TPM4-212ENST00000590180 TNS3Q68CZ2 1445 aa17.16■□□□□ 0.34
TPM4-212ENST00000590180 PLEKHG3A1L390 1219 aa17.16■□□□□ 0.34
TPM4-212ENST00000590180 FNBP4Q8N3X1 1017 aaPredicted RBP17.16■□□□□ 0.34
TPM4-212ENST00000590180 USP32Q8NFA0 1604 aa17.16■□□□□ 0.34
TPM4-212ENST00000590180 EVC2Q86UK5 1308 aa17.16■□□□□ 0.34
TPM4-212ENST00000590180 ARHGEF10O15013 1369 aa17.15■□□□□ 0.34
TPM4-212ENST00000590180 ACEP12821 1306 aa17.15■□□□□ 0.34
TPM4-212ENST00000590180 RBM6P78332 1123 aaKnown RBP17.14■□□□□ 0.33
TPM4-212ENST00000590180 TRPC5Q9UL62 973 aaPredicted RBP17.14■□□□□ 0.33
TPM4-212ENST00000590180 CABP1Q9NZU7 370 aa17.13■□□□□ 0.33
TPM4-212ENST00000590180 TRPM1Q7Z4N2 1603 aa17.13■□□□□ 0.33
TPM4-212ENST00000590180 ATP7BP35670 1465 aa17.12■□□□□ 0.33
TPM4-212ENST00000590180 COL22A1Q8NFW1 1626 aaPredicted RBP17.12■□□□□ 0.33
TPM4-212ENST00000590180 NUTM2GQ5VZR2 741 aa17.11■□□□□ 0.33
TPM4-212ENST00000590180 CCER1Q8TC90 406 aaPredicted RBP17.1■□□□□ 0.33
TPM4-212ENST00000590180 ABTB2Q8N961 1025 aa17.09■□□□□ 0.33
TPM4-212ENST00000590180 PPIP5K1Q6PFW1 1433 aa17.09■□□□□ 0.33
TPM4-212ENST00000590180 POLR3AO14802 1390 aaPredicted RBP17.08■□□□□ 0.32
TPM4-212ENST00000590180 FAM83GA6ND36 823 aa17.08■□□□□ 0.32
TPM4-212ENST00000590180 UNC5CLQ8IV45 518 aa17.08■□□□□ 0.32
TPM4-212ENST00000590180 CLSPNQ9HAW4 1339 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms