RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 NBPF1Q3BBV0 1214 aa30.48■■■□□ 2.47
ATG4D-212ENST00000590096 PLEKHH1Q9ULM0 1364 aa30.47■■■□□ 2.47
ATG4D-212ENST00000590096 POGKQ9P215 609 aa30.46■■■□□ 2.47
ATG4D-212ENST00000590096 PRAM1Q96QH2 718 aa30.45■■■□□ 2.47
ATG4D-212ENST00000590096 NBPF8Q3BBV2 869 aa30.44■■■□□ 2.46
ATG4D-212ENST00000590096 SLAIN2Q9P270 581 aa30.44■■■□□ 2.46
ATG4D-212ENST00000590096 TIMELESSQ9UNS1 1208 aa30.44■■■□□ 2.46
ATG4D-212ENST00000590096 ROCK2O75116 1388 aaKnown RBP30.43■■■□□ 2.46
ATG4D-212ENST00000590096 SOCS7O14512 581 aa30.42■■■□□ 2.46
ATG4D-212ENST00000590096 ARHGEF28Q8N1W1 1705 aaKnown RBP30.42■■■□□ 2.46
ATG4D-212ENST00000590096 SAFB2Q14151 953 aaKnown RBP eCLIP30.41■■■□□ 2.46
ATG4D-212ENST00000590096 CDC42BPGQ6DT37 1551 aa30.39■■■□□ 2.46
ATG4D-212ENST00000590096 ROBO1Q9Y6N7 1651 aa30.37■■■□□ 2.45
ATG4D-212ENST00000590096 MST1RQ04912 1400 aa30.36■■■□□ 2.45
ATG4D-212ENST00000590096 RALGAPBQ86X10 1494 aa30.36■■■□□ 2.45
ATG4D-212ENST00000590096 HSPA1LP34931 641 aa30.33■■■□□ 2.45
ATG4D-212ENST00000590096 GPRASP1Q5JY77 1395 aa30.32■■■□□ 2.44
ATG4D-212ENST00000590096 MINK1Q8N4C8 1332 aaPredicted RBP30.3■■■□□ 2.44
ATG4D-212ENST00000590096 CARD11Q9BXL7 1154 aa30.3■■■□□ 2.44
ATG4D-212ENST00000590096 ADGRB2O60241 1585 aa30.29■■■□□ 2.44
ATG4D-212ENST00000590096 C1orf167Q5SNV9 1468 aa30.29■■■□□ 2.44
ATG4D-212ENST00000590096 EIF3AQ14152 1382 aaKnown RBP30.28■■■□□ 2.44
ATG4D-212ENST00000590096 FMN2Q9NZ56 1722 aa30.27■■■□□ 2.44
ATG4D-212ENST00000590096 CENPJQ9HC77 1338 aaPredicted RBP30.27■■■□□ 2.44
ATG4D-212ENST00000590096 HIRIP3Q9BW71 556 aaPredicted RBP30.27■■■□□ 2.44
ATG4D-212ENST00000590096 BRINP3Q76B58 766 aa30.26■■■□□ 2.43
ATG4D-212ENST00000590096 NUTM2FA1L443 756 aa30.24■■■□□ 2.43
ATG4D-212ENST00000590096 QRICH2Q9H0J4 1663 aa30.22■■■□□ 2.43
ATG4D-212ENST00000590096 WASLO00401 505 aaPredicted RBP30.2■■■□□ 2.43
ATG4D-212ENST00000590096 PHLPP1O60346 1717 aa30.19■■■□□ 2.42
ATG4D-212ENST00000590096 ESCO1Q5FWF5 840 aa30.19■■■□□ 2.42
ATG4D-212ENST00000590096 ORAI2Q96SN7 254 aa30.18■■■□□ 2.42
ATG4D-212ENST00000590096 AHDC1Q5TGY3 1603 aaPredicted RBP30.18■■■□□ 2.42
ATG4D-212ENST00000590096 ANKARQ7Z5J8 1434 aa30.16■■■□□ 2.42
ATG4D-212ENST00000590096 TULP4Q9NRJ4 1543 aa30.15■■■□□ 2.42
ATG4D-212ENST00000590096 NHSL1Q5SYE7 1610 aa30.14■■■□□ 2.41
ATG4D-212ENST00000590096 RGPD8O14715 1765 aaPredicted RBP30.13■■■□□ 2.41
ATG4D-212ENST00000590096 CDK19Q9BWU1 502 aa30.12■■■□□ 2.41
ATG4D-212ENST00000590096 USP32Q8NFA0 1604 aa30.11■■■□□ 2.41
ATG4D-212ENST00000590096 KIF1AQ12756 1690 aa30.11■■■□□ 2.41
ATG4D-212ENST00000590096 MED1Q15648 1581 aaPredicted RBP30.11■■■□□ 2.41
ATG4D-212ENST00000590096 COL16A1Q07092 1604 aaPredicted RBP30.1■■■□□ 2.41
ATG4D-212ENST00000590096 DDX17Q92841 729 aaKnown RBP30.08■■■□□ 2.41
ATG4D-212ENST00000590096 PHF8Q9UPP1 1060 aa30.08■■■□□ 2.41
ATG4D-212ENST00000590096 EVC2Q86UK5 1308 aa30.07■■■□□ 2.4
ATG4D-212ENST00000590096 NPHP3Q7Z494 1330 aa30.06■■■□□ 2.4
ATG4D-212ENST00000590096 PRR36Q9H6K5 1346 aa30.06■■■□□ 2.4
ATG4D-212ENST00000590096 SRPK2P78362 688 aaKnown RBP30.06■■■□□ 2.4
ATG4D-212ENST00000590096 ITSN1Q15811 1721 aa30.05■■■□□ 2.4
ATG4D-212ENST00000590096 USP47Q96K76 1375 aa30.05■■■□□ 2.4
ATG4D-212ENST00000590096 SBNO2Q9Y2G9 1366 aa30.05■■■□□ 2.4
ATG4D-212ENST00000590096 NUDT16Q96DE0 195 aaKnown RBP30.05■■■□□ 2.4
ATG4D-212ENST00000590096 ATP7BP35670 1465 aa30.05■■■□□ 2.4
ATG4D-212ENST00000590096 FOXO3O43524 673 aa30.04■■■□□ 2.4
ATG4D-212ENST00000590096 ST20-MTHFSA0A0A6YYL1 179 aa30.01■■■□□ 2.39
ATG4D-212ENST00000590096 CABP2Q9NPB3 220 aa30.01■■■□□ 2.39
ATG4D-212ENST00000590096 JCADQ9P266 1359 aa30.01■■■□□ 2.39
ATG4D-212ENST00000590096 PMFBP1Q8TBY8 1022 aa30■■■□□ 2.39
ATG4D-212ENST00000590096 LRRC59Q96AG4 307 aaKnown RBP30■■■□□ 2.39
ATG4D-212ENST00000590096 SOS2Q07890 1332 aaPredicted RBP29.99■■■□□ 2.39
ATG4D-212ENST00000590096 TOPAZ1Q8N9V7 1692 aa29.98■■■□□ 2.39
ATG4D-212ENST00000590096 CCDC61Q9Y6R9 512 aa29.98■■■□□ 2.39
ATG4D-212ENST00000590096 PXDNQ92626 1479 aa29.97■■■□□ 2.39
ATG4D-212ENST00000590096 SLC24A1O60721 1099 aa29.96■■■□□ 2.39
ATG4D-212ENST00000590096 XPCQ01831 940 aaPredicted RBP29.96■■■□□ 2.39
ATG4D-212ENST00000590096 NGDNQ8NEJ9 315 aaKnown RBP29.95■■■□□ 2.39
ATG4D-212ENST00000590096 PSME1Q06323 249 aa29.94■■■□□ 2.38
ATG4D-212ENST00000590096 SHPRHQ149N8 1683 aa29.94■■■□□ 2.38
ATG4D-212ENST00000590096 KRT28Q7Z3Y7 464 aa29.93■■■□□ 2.38
ATG4D-212ENST00000590096 TESK2Q96S53 571 aa29.93■■■□□ 2.38
ATG4D-212ENST00000590096 PPIP5K1Q6PFW1 1433 aa29.93■■■□□ 2.38
ATG4D-212ENST00000590096 ATAD2Q6PL18 1390 aa29.9■■■□□ 2.38
ATG4D-212ENST00000590096 PLEKHG3A1L390 1219 aa29.89■■■□□ 2.38
ATG4D-212ENST00000590096 PHF23Q9BUL5 403 aaPredicted RBP29.89■■■□□ 2.38
ATG4D-212ENST00000590096 EIF4G2P78344 907 aaKnown RBP eCLIP29.88■■■□□ 2.37
ATG4D-212ENST00000590096 PNPLA6Q8IY17 1366 aa29.88■■■□□ 2.37
ATG4D-212ENST00000590096 ACEP12821 1306 aa29.87■■■□□ 2.37
ATG4D-212ENST00000590096 SPATA31A6Q5VVP1 1343 aa29.87■■■□□ 2.37
ATG4D-212ENST00000590096 TMF1P82094 1093 aa29.86■■■□□ 2.37
ATG4D-212ENST00000590096 CABP1Q9NZU7 370 aa29.86■■■□□ 2.37
ATG4D-212ENST00000590096 POLR3AO14802 1390 aaPredicted RBP29.86■■■□□ 2.37
ATG4D-212ENST00000590096 SBNO1A3KN83 1393 aa29.85■■■□□ 2.37
ATG4D-212ENST00000590096 TNS3Q68CZ2 1445 aa29.84■■■□□ 2.37
ATG4D-212ENST00000590096 SPATA31A3Q5VYP0 1347 aa29.83■■■□□ 2.37
ATG4D-212ENST00000590096 PUS7Q96PZ0 661 aaKnown RBP29.83■■■□□ 2.37
ATG4D-212ENST00000590096 HSPA5P11021 654 aaKnown RBP29.81■■■□□ 2.36
ATG4D-212ENST00000590096 TRPM3Q9HCF6 1732 aaPredicted RBP29.81■■■□□ 2.36
ATG4D-212ENST00000590096 LMOD2Q6P5Q4 547 aa29.8■■■□□ 2.36
ATG4D-212ENST00000590096 COL22A1Q8NFW1 1626 aaPredicted RBP29.79■■■□□ 2.36
ATG4D-212ENST00000590096 PAK3O75914 559 aaPredicted RBP29.79■■■□□ 2.36
ATG4D-212ENST00000590096 CDCA8Q53HL2 280 aa29.79■■■□□ 2.36
ATG4D-212ENST00000590096 ARHGEF10O15013 1369 aa29.78■■■□□ 2.36
ATG4D-212ENST00000590096 NUTM2BA6NNL0 878 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-212ENST00000590096 NUTM2EB1AL46 878 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-212ENST00000590096 NUTM2AQ8IVF1 878 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-212ENST00000590096 TMC1Q8TDI8 760 aa29.78■■■□□ 2.36
ATG4D-212ENST00000590096 RGS17Q9UGC6 210 aaPredicted RBP29.78■■■□□ 2.36
ATG4D-212ENST00000590096 MEX3CQ5U5Q3 659 aaKnown RBP29.74■■■□□ 2.35
ATG4D-212ENST00000590096 LRP6O75581 1613 aa29.74■■■□□ 2.35
ATG4D-212ENST00000590096 ALS2Q96Q42 1657 aa29.73■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms