RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 SIRT1Q96EB6 747 aa29.68■■■□□ 2.34
SS18-224ENST00000584083 CDC42BPGQ6DT37 1551 aa29.68■■■□□ 2.34
SS18-224ENST00000584083 DDX17Q92841 729 aaKnown RBP29.66■■■□□ 2.34
SS18-224ENST00000584083 ORAI2Q96SN7 254 aa29.66■■■□□ 2.34
SS18-224ENST00000584083 TRIM26Q12899 539 aaPredicted RBP29.63■■■□□ 2.33
SS18-224ENST00000584083 ADGRB1O14514 1584 aa29.62■■■□□ 2.33
SS18-224ENST00000584083 PRAM1Q96QH2 718 aa29.62■■■□□ 2.33
SS18-224ENST00000584083 POGKQ9P215 609 aa29.62■■■□□ 2.33
SS18-224ENST00000584083 SHPRHQ149N8 1683 aa29.62■■■□□ 2.33
SS18-224ENST00000584083 NUTM2FA1L443 756 aa29.61■■■□□ 2.33
SS18-224ENST00000584083 SAFB2Q14151 953 aaKnown RBP eCLIP29.61■■■□□ 2.33
SS18-224ENST00000584083 TRAK1Q9UPV9 953 aa29.61■■■□□ 2.33
SS18-224ENST00000584083 ESCO1Q5FWF5 840 aa29.6■■■□□ 2.33
SS18-224ENST00000584083 LRRC59Q96AG4 307 aaKnown RBP29.6■■■□□ 2.33
SS18-224ENST00000584083 SPATA31A6Q5VVP1 1343 aa29.6■■■□□ 2.33
SS18-224ENST00000584083 DLC1Q96QB1 1528 aa29.58■■■□□ 2.33
SS18-224ENST00000584083 FMN2Q9NZ56 1722 aa29.57■■■□□ 2.32
SS18-224ENST00000584083 SIN3AQ96ST3 1273 aa29.55■■■□□ 2.32
SS18-224ENST00000584083 MEX3CQ5U5Q3 659 aaKnown RBP29.54■■■□□ 2.32
SS18-224ENST00000584083 RGS17Q9UGC6 210 aaPredicted RBP29.54■■■□□ 2.32
SS18-224ENST00000584083 NUTM2BA6NNL0 878 aaPredicted RBP29.53■■■□□ 2.32
SS18-224ENST00000584083 NUTM2EB1AL46 878 aaPredicted RBP29.53■■■□□ 2.32
SS18-224ENST00000584083 NUTM2AQ8IVF1 878 aaPredicted RBP29.53■■■□□ 2.32
SS18-224ENST00000584083 NEUROD1Q13562 356 aa29.52■■■□□ 2.32
SS18-224ENST00000584083 SOCS7O14512 581 aa29.51■■■□□ 2.31
SS18-224ENST00000584083 LRP6O75581 1613 aa29.51■■■□□ 2.31
SS18-224ENST00000584083 SOS2Q07890 1332 aaPredicted RBP29.5■■■□□ 2.31
SS18-224ENST00000584083 RGPD8O14715 1765 aaPredicted RBP29.5■■■□□ 2.31
SS18-224ENST00000584083 KIAA1210Q9ULL0 1709 aa29.5■■■□□ 2.31
SS18-224ENST00000584083 NPHP3Q7Z494 1330 aa29.49■■■□□ 2.31
SS18-224ENST00000584083 FOXO3O43524 673 aa29.48■■■□□ 2.31
SS18-224ENST00000584083 L3MBTL2Q969R5 705 aa29.48■■■□□ 2.31
SS18-224ENST00000584083 PNPLA6Q8IY17 1366 aa29.48■■■□□ 2.31
SS18-224ENST00000584083 MINK1Q8N4C8 1332 aaPredicted RBP29.46■■■□□ 2.31
SS18-224ENST00000584083 HIRIP3Q9BW71 556 aaPredicted RBP29.46■■■□□ 2.31
SS18-224ENST00000584083 ARHGEF28Q8N1W1 1705 aaKnown RBP29.45■■■□□ 2.3
SS18-224ENST00000584083 XPCQ01831 940 aaPredicted RBP29.44■■■□□ 2.3
SS18-224ENST00000584083 KIF1AQ12756 1690 aa29.44■■■□□ 2.3
SS18-224ENST00000584083 ADGRB2O60241 1585 aa29.43■■■□□ 2.3
SS18-224ENST00000584083 NBPF1Q3BBV0 1214 aa29.42■■■□□ 2.3
SS18-224ENST00000584083 POTEAQ6S8J7 498 aa29.42■■■□□ 2.3
SS18-224ENST00000584083 PHF8Q9UPP1 1060 aa29.41■■■□□ 2.3
SS18-224ENST00000584083 PXDNQ92626 1479 aa29.41■■■□□ 2.3
SS18-224ENST00000584083 ANKARQ7Z5J8 1434 aa29.37■■■□□ 2.29
SS18-224ENST00000584083 USP32Q8NFA0 1604 aa29.36■■■□□ 2.29
SS18-224ENST00000584083 WASLO00401 505 aaPredicted RBP29.36■■■□□ 2.29
SS18-224ENST00000584083 EIF3AQ14152 1382 aaKnown RBP29.36■■■□□ 2.29
SS18-224ENST00000584083 KRT28Q7Z3Y7 464 aa29.35■■■□□ 2.29
SS18-224ENST00000584083 ADAMTS2O95450 1211 aa29.34■■■□□ 2.29
SS18-224ENST00000584083 ZNF772Q68DY9 489 aaPredicted RBP29.34■■■□□ 2.29
SS18-224ENST00000584083 C8orf37Q96NL8 207 aa29.33■■■□□ 2.29
SS18-224ENST00000584083 COL22A1Q8NFW1 1626 aaPredicted RBP29.32■■■□□ 2.28
SS18-224ENST00000584083 PMFBP1Q8TBY8 1022 aa29.32■■■□□ 2.28
SS18-224ENST00000584083 TULP4Q9NRJ4 1543 aa29.31■■■□□ 2.28
SS18-224ENST00000584083 PSME1Q06323 249 aa29.31■■■□□ 2.28
SS18-224ENST00000584083 AFF2P51816 1311 aa29.3■■■□□ 2.28
SS18-224ENST00000584083 PRR36Q9H6K5 1346 aa29.29■■■□□ 2.28
SS18-224ENST00000584083 TRPM1Q7Z4N2 1603 aa29.28■■■□□ 2.28
SS18-224ENST00000584083 SPATA31A3Q5VYP0 1347 aa29.28■■■□□ 2.28
SS18-224ENST00000584083 NGLY1Q96IV0 654 aa29.27■■■□□ 2.28
SS18-224ENST00000584083 CDK19Q9BWU1 502 aa29.26■■■□□ 2.27
SS18-224ENST00000584083 TONSLQ96HA7 1378 aa29.25■■■□□ 2.27
SS18-224ENST00000584083 CENPJQ9HC77 1338 aaPredicted RBP29.24■■■□□ 2.27
SS18-224ENST00000584083 ITSN1Q15811 1721 aa29.23■■■□□ 2.27
SS18-224ENST00000584083 LMOD2Q6P5Q4 547 aa29.23■■■□□ 2.27
SS18-224ENST00000584083 NUDT16Q96DE0 195 aaKnown RBP29.23■■■□□ 2.27
SS18-224ENST00000584083 ROCK2O75116 1388 aaKnown RBP29.23■■■□□ 2.27
SS18-224ENST00000584083 TNS3Q68CZ2 1445 aa29.22■■■□□ 2.27
SS18-224ENST00000584083 NGDNQ8NEJ9 315 aaKnown RBP29.21■■■□□ 2.27
SS18-224ENST00000584083 SBNO1A3KN83 1393 aa29.21■■■□□ 2.27
SS18-224ENST00000584083 GPRASP1Q5JY77 1395 aa29.21■■■□□ 2.27
SS18-224ENST00000584083 QRICH2Q9H0J4 1663 aa29.21■■■□□ 2.27
SS18-224ENST00000584083 NBPF8Q3BBV2 869 aa29.2■■■□□ 2.26
SS18-224ENST00000584083 ATP7BP35670 1465 aa29.19■■■□□ 2.26
SS18-224ENST00000584083 PLEKHG5O94827 1062 aa29.19■■■□□ 2.26
SS18-224ENST00000584083 MARF1Q9Y4F3 1742 aaKnown RBP29.19■■■□□ 2.26
SS18-224ENST00000584083 RXRBP28702 533 aa29.17■■■□□ 2.26
SS18-224ENST00000584083 HAP1P54257 671 aaPredicted RBP29.17■■■□□ 2.26
SS18-224ENST00000584083 QTRT2Q9H974 415 aaKnown RBP29.16■■■□□ 2.26
SS18-224ENST00000584083 ARHGEF10O15013 1369 aa29.15■■■□□ 2.26
SS18-224ENST00000584083 SRPK2P78362 688 aaKnown RBP29.15■■■□□ 2.26
SS18-224ENST00000584083 USP21Q9UK80 565 aa29.15■■■□□ 2.26
SS18-224ENST00000584083 TRPM3Q9HCF6 1732 aaPredicted RBP29.14■■■□□ 2.26
SS18-224ENST00000584083 CCDC61Q9Y6R9 512 aa29.14■■■□□ 2.26
SS18-224ENST00000584083 CABLES1Q8TDN4 633 aa29.13■■■□□ 2.25
SS18-224ENST00000584083 FNBP4Q8N3X1 1017 aaPredicted RBP29.12■■■□□ 2.25
SS18-224ENST00000584083 PAK3O75914 559 aaPredicted RBP29.11■■■□□ 2.25
SS18-224ENST00000584083 PCGF6Q9BYE7 350 aa29.11■■■□□ 2.25
SS18-224ENST00000584083 TOPAZ1Q8N9V7 1692 aa29.11■■■□□ 2.25
SS18-224ENST00000584083 CABP2Q9NPB3 220 aa29.1■■■□□ 2.25
SS18-224ENST00000584083 RBM6P78332 1123 aaKnown RBP29.08■■■□□ 2.25
SS18-224ENST00000584083 CARD11Q9BXL7 1154 aa29.08■■■□□ 2.25
SS18-224ENST00000584083 ALS2Q96Q42 1657 aa29.08■■■□□ 2.25
SS18-224ENST00000584083 ACEP12821 1306 aa29.07■■■□□ 2.24
SS18-224ENST00000584083 ABCA3Q99758 1704 aa29.06■■■□□ 2.24
SS18-224ENST00000584083 EVC2Q86UK5 1308 aa29.06■■■□□ 2.24
SS18-224ENST00000584083 PLEKHG3A1L390 1219 aa29.06■■■□□ 2.24
SS18-224ENST00000584083 TRPC5Q9UL62 973 aaPredicted RBP29.06■■■□□ 2.24
SS18-224ENST00000584083 RALGAPBQ86X10 1494 aa29.04■■■□□ 2.24
SS18-224ENST00000584083 PPIP5K1Q6PFW1 1433 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms